/dports/devel/boost-python-libs/boost_1_72_0/libs/iostreams/test/ |
H A D | bzip2_test.cpp | 57 const int num_sequences = 10; in multiple_member_test() local 64 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 77 BOOST_REQUIRE_EQUAL(data.size() * num_sequences, dest.size()); in multiple_member_test() 78 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 79 … BOOST_CHECK(std::equal(data.begin(), data.end(), dest.begin() + i * dest.size() / num_sequences)); in multiple_member_test() 87 BOOST_REQUIRE_EQUAL(data.size() * num_sequences, dest.size()); in multiple_member_test() 88 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 89 … BOOST_CHECK(std::equal(data.begin(), data.end(), dest.begin() + i * dest.size() / num_sequences)); in multiple_member_test()
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/dports/devel/boost-docs/boost_1_72_0/libs/iostreams/test/ |
H A D | bzip2_test.cpp | 57 const int num_sequences = 10; in multiple_member_test() local 64 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 77 BOOST_REQUIRE_EQUAL(data.size() * num_sequences, dest.size()); in multiple_member_test() 78 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 79 … BOOST_CHECK(std::equal(data.begin(), data.end(), dest.begin() + i * dest.size() / num_sequences)); in multiple_member_test() 87 BOOST_REQUIRE_EQUAL(data.size() * num_sequences, dest.size()); in multiple_member_test() 88 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 89 … BOOST_CHECK(std::equal(data.begin(), data.end(), dest.begin() + i * dest.size() / num_sequences)); in multiple_member_test()
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/dports/devel/boost-libs/boost_1_72_0/libs/iostreams/test/ |
H A D | bzip2_test.cpp | 57 const int num_sequences = 10; in multiple_member_test() local 64 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 77 BOOST_REQUIRE_EQUAL(data.size() * num_sequences, dest.size()); in multiple_member_test() 78 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 79 … BOOST_CHECK(std::equal(data.begin(), data.end(), dest.begin() + i * dest.size() / num_sequences)); in multiple_member_test() 87 BOOST_REQUIRE_EQUAL(data.size() * num_sequences, dest.size()); in multiple_member_test() 88 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 89 … BOOST_CHECK(std::equal(data.begin(), data.end(), dest.begin() + i * dest.size() / num_sequences)); in multiple_member_test()
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/dports/devel/hyperscan/boost_1_75_0/libs/iostreams/test/ |
H A D | bzip2_test.cpp | 57 const int num_sequences = 10; in multiple_member_test() local 64 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 77 BOOST_REQUIRE_EQUAL(data.size() * num_sequences, dest.size()); in multiple_member_test() 78 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 79 … BOOST_CHECK(std::equal(data.begin(), data.end(), dest.begin() + i * dest.size() / num_sequences)); in multiple_member_test() 87 BOOST_REQUIRE_EQUAL(data.size() * num_sequences, dest.size()); in multiple_member_test() 88 for(int i = 0; i < num_sequences; ++i) in multiple_member_test() 89 … BOOST_CHECK(std::equal(data.begin(), data.end(), dest.begin() + i * dest.size() / num_sequences)); in multiple_member_test()
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Align/ |
H A D | PairwiseStatistics.pm | 106 } elsif ( $aln->num_sequences != 2 ) { 108 $aln->num_sequences." sequences in alignment\n"); 130 } elsif ( $aln->num_sequences != 2 ) { 132 $aln->num_sequences." sequences in alignment\n"); 169 } elsif ( $aln->num_sequences != 2 ) { 171 $aln->num_sequences." sequences in alignment\n"); 211 } elsif ( $aln->num_sequences != 2 ) { 213 $aln->num_sequences." sequences in alignment\n");
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/ |
H A D | aln_printer.cpp | 197 int num_sequences = m_AlnVec->GetNumRows(); in x_PrintPhylipSequential() local 207 for (int i=0;i < num_sequences;i++) { in x_PrintPhylipSequential() 245 int num_sequences = m_AlnVec->GetNumRows(); in x_PrintPhylipInterleaved() local 252 ostr << " " << num_sequences << " " << aln_width << NcbiEndl; in x_PrintPhylipInterleaved() 255 for (int i=0;i < num_sequences;i++) { in x_PrintPhylipInterleaved() 283 for (int i=0;i < num_sequences;i++) { in x_PrintPhylipInterleaved() 300 int num_sequences = m_AlnVec->GetNumRows(); in x_PrintNexus() local 302 vector<string> seqids(num_sequences); in x_PrintNexus() 304 for (int i=0;i < num_sequences;i++) { in x_PrintNexus() 314 << "DIMENSIONS ntax=" << num_sequences << " nchar=" in x_PrintNexus() [all …]
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/ |
H A D | aln_printer.cpp | 197 int num_sequences = m_AlnVec->GetNumRows(); in x_PrintPhylipSequential() local 207 for (int i=0;i < num_sequences;i++) { in x_PrintPhylipSequential() 245 int num_sequences = m_AlnVec->GetNumRows(); in x_PrintPhylipInterleaved() local 252 ostr << " " << num_sequences << " " << aln_width << NcbiEndl; in x_PrintPhylipInterleaved() 255 for (int i=0;i < num_sequences;i++) { in x_PrintPhylipInterleaved() 283 for (int i=0;i < num_sequences;i++) { in x_PrintPhylipInterleaved() 300 int num_sequences = m_AlnVec->GetNumRows(); in x_PrintNexus() local 302 vector<string> seqids(num_sequences); in x_PrintNexus() 304 for (int i=0;i < num_sequences;i++) { in x_PrintNexus() 314 << "DIMENSIONS ntax=" << num_sequences << " nchar=" in x_PrintNexus() [all …]
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/dports/science/pybrain/pybrain-0.3.3/pybrain/tools/plotting/ |
H A D | classification.py | 80 num_sequences = dataset.getNumSequences() 87 for seq_i in range(num_sequences): 98 …% Correct Classification (red dots mean bad classification)'.format(correct * 100 / num_sequences)) 101 plt.scatter(list(range(num_sequences)), expected, s=s, c='r', linewidths=0) 102 plt.scatter(list(range(num_sequences)), actual, s=s, c='k') 103 …plt.scatter(confidence_x, list(range(module.outdim)) * num_sequences, s=s*np.array(confidence_s), …
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/AlignIO/ |
H A D | arp.t | 29 is($aln->num_sequences, 60,'ARP num_sequences()'); 49 is($aln->num_sequences, 3,'ARP num_sequences()'); 65 is($aln->num_sequences, 8,'ARP num_sequences()'); 81 is($aln->num_sequences, 6,'ARP num_sequences()');
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H A D | meme.t | 23 is $aln->num_sequences,4; 34 is $aln->num_sequences,8; 46 is $aln->num_sequences,47;
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H A D | po.t | 33 is $aln->num_sequences, 6; 54 is $aln2->num_sequences, $aln->num_sequences;
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/dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/alignment/ |
H A D | _repr.py | 28 num_sequences = self._obj.shape.sequence 35 if num_sequences <= 5: 37 self._format_sequences(range(num_sequences))) 42 range(num_sequences - 2, num_sequences)))
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/dports/science/py-DendroPy/DendroPy-4.4.0/src/dendropy/calculate/ |
H A D | popgenstat.py | 129 def _tajimas_d(num_sequences, avg_num_pairwise_differences, num_segregating_sites): argument 145 a1 = sum([1.0/i for i in range(1, num_sequences)]) 146 a2 = sum([1.0/(i**2) for i in range(1, num_sequences)]) 147 b1 = float(num_sequences+1)/(3*(num_sequences-1)) 148 b2 = float(2 * ( (num_sequences**2) + num_sequences + 3 )) / (9*num_sequences*(num_sequences-1)) 150 c2 = b2 - float(num_sequences+2)/(a1 * num_sequences) + float(a2)/(a1 ** 2) 191 num_sequences = len(sequences) 197 return _tajimas_d(num_sequences, avg_num_pairwise_differences, num_segregating_sites)
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/dports/games/avp/avp-20170505/src/win95/ |
H A D | animobs.cpp | 435 num_sequences=0; in Object_Animation_All_Sequence_Chunk() 442 num_sequences=*(int*)data; in Object_Animation_All_Sequence_Chunk() 445 if(num_sequences) sequences=new Object_Animation_Sequence[num_sequences]; in Object_Animation_All_Sequence_Chunk() 448 for(int i=0;i<num_sequences;i++) in Object_Animation_All_Sequence_Chunk() 478 *(int*)data=num_sequences; in fill_data_block() 481 for(int i=0;i<num_sequences;i++) in fill_data_block() 505 chunk_size+=num_sequences*16; in size_chunk() 506 for(int i=0;i<num_sequences;i++) in size_chunk()
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/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/t/ |
H A D | MAFFT.t | 37 is( $aln->num_sequences, 7); 50 is $aln->num_sequences, 7; 57 is $aln->num_sequences, 7; 66 is $aln->num_sequences, 7; 79 is $aln->num_sequences, 7;
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H A D | Probalign.t | 35 is( $aln->num_sequences, 7); 48 is $aln->num_sequences, 7; 58 is $aln->num_sequences, 7; 66 is $aln->num_sequences, 3;
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H A D | Muscle.t | 44 is( $aln->num_sequences, 7 ); 57 is $aln->num_sequences, 7; 79 is $aln->num_sequences, 7; 86 is $aln->num_sequences, 3;
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H A D | MSAProbs.t | 39 is( $aln->num_sequences, 7); 53 is $aln->num_sequences, 7; 76 is $aln->num_sequences, 7; 85 is $aln->num_sequences, 3;
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H A D | Kalign.t | 26 is( $aln->num_sequences, 7); 39 is $aln->num_sequences, 7;
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/dports/textproc/meld-legacy/meld-1.8.6/meld/ |
H A D | diffutil.py | 77 self.num_sequences = 0 91 if self.num_sequences == 3: 192 if sequence == 2 or (sequence == 1 and self.num_sequences == 3): 225 if self.num_sequences == 3: 456 self.num_sequences = len(sequences) 459 for i in range(self.num_sequences - 1): 477 self.seqlength = [0] * self.num_sequences 480 self._update_merge_cache([""] * self.num_sequences)
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/dports/games/avp/avp-20170505/src/avp/ |
H A D | bh_plachier.h | 53 int num_sequences; member 75 int num_sequences; member
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/ |
H A D | blast_input.cpp | 309 TSeqPos num_sequences = 0; in GetNextSeqBatch() local 310 while (bases_added < m_BatchSize && num_sequences < m_MaxNumSequences && in GetNextSeqBatch() 317 num_sequences++; in GetNextSeqBatch() 321 m_NumSeqs += (Int8)num_sequences; in GetNextSeqBatch()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/ |
H A D | blast_input.cpp | 309 TSeqPos num_sequences = 0; in GetNextSeqBatch() local 310 while (bases_added < m_BatchSize && num_sequences < m_MaxNumSequences && in GetNextSeqBatch() 317 num_sequences++; in GetNextSeqBatch() 321 m_NumSeqs += (Int8)num_sequences; in GetNextSeqBatch()
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/dports/textproc/meld/meld-3.20.4/meld/matchers/ |
H A D | diffutil.py | 82 self.num_sequences = 0 96 if self.num_sequences == 3: 203 if sequence == 2 or (sequence == 1 and self.num_sequences == 3): 236 if self.num_sequences == 3: 492 self.num_sequences = len(sequences) 495 for i in range(self.num_sequences - 1): 513 self.seqlength = [0] * self.num_sequences 516 self._update_merge_cache([""] * self.num_sequences)
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Align/ |
H A D | SimpleAlign.t | 38 is( $aln2->num_sequences, 3, 'num_sequences' ); 42 is( $aln2->num_sequences, 10, 'num_sequences' ); 56 is( $aln2->num_sequences, 10, 'num_sequences' ); 70 is( $aln3->num_sequences, 3, 'select_noncont_by_name' ); 108 is $aln->num_sequences, 16, 'num_sequences'; 144 is $aln->num_sequences, 15, 'remove_seqs'; 146 is $aln->num_sequences, 16, 'add_seq'; 154 is $aln->num_sequences, 4, 'purge'; 318 $a = $new_aln->num_sequences; 379 is $aln->num_sequences, 3, 'added 3 seqs';
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