Searched refs:o_fq (Results 1 – 5 of 5) sorted by relevance
316 m4mod->o_fq = (phydbl *)mCalloc(n_o,sizeof(phydbl)); in M4_Make_Complete()411 for(i=0;i<n_s;i++) mod->e_frq->pi->v[i] = m4mod->o_fq[i%n_o] * m4mod->h_fq[i/n_o]; in M4_Update_Qmat()437 Update_Qmat_Generic(m4mod->o_rr, m4mod->o_fq, m4mod->n_o, m4mod->o_mats[0]); in M4_Update_Qmat()455 …->r_mat->qmat->v[j*n_s+i] = mod->r_mat->qmat->v[i*n_s+j] * m4mod->o_fq[i%n_o] / m4mod->o_fq[j%n_o]; in M4_Update_Qmat()467 mr += sum * m4mod->o_fq[i%n_o] * m4mod->h_fq[(int)(i/n_o)]; in M4_Update_Qmat()697 tree->mod->m4mod->o_fq[j] * in M4_Post_Prob_H_Class_Edge_Site()740 tree->mod->m4mod->o_fq[j] * in M4_Post_Prob_H_Class_Edge_Site()1644 for(i=0;i<n_o;i++) cpy_m4mod->o_fq[i] = ori_m4mod->o_fq[i]; in M4_Copy_M4_Model()
983 for(i=0;i<mod->ns;i++) mod->e_frq->pi->v[i] = mod->m4mod->o_fq[i]; in Switch_From_M4mod_To_Mod()1050 …for(i=0;i<mod->ns;i++) mod->e_frq->pi->v[i] = mod->m4mod->o_fq[i%mod->m4mod->n_o] * mod->m4mod->h_… in Switch_From_Mod_To_M4mod()
1494 phydbl *o_fq; /*! equilibrium frequencies for the observable states */ member
3726 …for(i=0;i<m4mod->n_o;i++) m4mod->o_fq[i] = mod->e_frq->pi->v[i]; /*! At that stage, the mod->pi ve… in M4_Init_Model()
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