Searched refs:ogcp1 (Results 1 – 10 of 10) sorted by relevance
/dports/biology/mafft/mafft-7.267-without-extensions/core/ |
H A D | Lalignmm.c | 395 double *ogcp1; in MSalign2m2m_rec() local 595 m[0] = ogcp1[i]; in MSalign2m2m_rec() 1295 double *ogcp1; in MSalignmm_rec() local 1495 m[0] = ogcp1[i]; in MSalignmm_rec() 2171 double *ogcp1; in Lalignmm_hmout() local 2256 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty; in Lalignmm_hmout() 2279 gapinfo[0] = ogcp1; in Lalignmm_hmout() 2328 FreeFloatVec( ogcp1 ); in Lalignmm_hmout() 2373 double *ogcp1; in Lalign2m2m_hmout() local 2458 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty; in Lalign2m2m_hmout() [all …]
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H A D | MSalignmm.c | 352 double *ogcp1; in MSalignmm_tanni() local 686 double *ogcp1; in MSalignmm_rec() local 929 m[0] = ogcp1[i]; in MSalignmm_rec() 1645 double *ogcp1, in freearrays() argument 1682 double *ogcp1; in MSalignmm() local 1801 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1f[i] ); in MSalignmm() 1957 double *ogcp1; in MSalignmm_tanni_variousdist() local 2294 double *ogcp1; in MSalignmm_rec_variousdist() local 2553 m[0] = ogcp1[i]; in MSalignmm_rec_variousdist() 3284 double *ogcp1, in freearrays_variousdist() argument [all …]
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H A D | partSalignmm.c | 984 static TLS double *ogcp1; in partA__align() local 1049 FreeFloatVec( ogcp1 ); in partA__align() 1167 FreeFloatVec( ogcp1 ); in partA__align() 1202 ogcp1 = AllocateFloatVec( ll1+2 ); in partA__align() 1306 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1[i] ); in partA__align() 1451 ogcp1va = ogcp1[i]; in partA__align() 1672 static TLS double *ogcp1; in partA__align_variousdist() local 1738 FreeFloatVec( ogcp1 ); in partA__align_variousdist() 1879 FreeFloatVec( ogcp1 ); in partA__align_variousdist() 2018 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1[i] ); in partA__align_variousdist() [all …]
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H A D | Salignmm.c | 1046 static TLS double *ogcp1; in A__align() local 1111 FreeFloatVec( ogcp1 ); in A__align() 1235 FreeFloatVec( ogcp1 ); in A__align() 1270 ogcp1 = AllocateFloatVec( ll1+2 ); in A__align() 1402 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1[i] ); in A__align() 1569 ogcp1va = ogcp1[i]; in A__align() 1813 static TLS double *ogcp1; in A__align_variousdist() local 1876 FreeFloatVec( ogcp1 ); in A__align_variousdist() 2027 FreeFloatVec( ogcp1 ); in A__align_variousdist() 2197 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1[i] ); in A__align_variousdist() [all …]
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H A D | Galign11.c | 416 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in G__align11() 818 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in G__align11_noalign()
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H A D | Lalign11.c | 416 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in L__align11() 918 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in L__align11_noalign()
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H A D | genalign11.c | 314 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in genL__align11()
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H A D | MSalign11.c | 435 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in MSalign11()
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H A D | suboptalign11.c | 316 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in suboptalign11()
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H A D | Dalignmm.c | 3471 m[j] = currentw[j-1] + ogcp1[1] * gapfreq2[j-1]; mp[j] = 0;; in D__align() 5386 m[j] = currentw[j-1] + ogcp1[1] * gapfreq2[j-1]; mp[j] = 0;; in D__align_variousdist()
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