Home
last modified time | relevance | path

Searched refs:ogcp1 (Results 1 – 10 of 10) sorted by relevance

/dports/biology/mafft/mafft-7.267-without-extensions/core/
H A DLalignmm.c395 double *ogcp1; in MSalign2m2m_rec() local
595 m[0] = ogcp1[i]; in MSalign2m2m_rec()
1295 double *ogcp1; in MSalignmm_rec() local
1495 m[0] = ogcp1[i]; in MSalignmm_rec()
2171 double *ogcp1; in Lalignmm_hmout() local
2256 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty; in Lalignmm_hmout()
2279 gapinfo[0] = ogcp1; in Lalignmm_hmout()
2328 FreeFloatVec( ogcp1 ); in Lalignmm_hmout()
2373 double *ogcp1; in Lalign2m2m_hmout() local
2458 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty; in Lalign2m2m_hmout()
[all …]
H A DMSalignmm.c352 double *ogcp1; in MSalignmm_tanni() local
686 double *ogcp1; in MSalignmm_rec() local
929 m[0] = ogcp1[i]; in MSalignmm_rec()
1645 double *ogcp1, in freearrays() argument
1682 double *ogcp1; in MSalignmm() local
1801 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1f[i] ); in MSalignmm()
1957 double *ogcp1; in MSalignmm_tanni_variousdist() local
2294 double *ogcp1; in MSalignmm_rec_variousdist() local
2553 m[0] = ogcp1[i]; in MSalignmm_rec_variousdist()
3284 double *ogcp1, in freearrays_variousdist() argument
[all …]
H A DpartSalignmm.c984 static TLS double *ogcp1; in partA__align() local
1049 FreeFloatVec( ogcp1 ); in partA__align()
1167 FreeFloatVec( ogcp1 ); in partA__align()
1202 ogcp1 = AllocateFloatVec( ll1+2 ); in partA__align()
1306 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1[i] ); in partA__align()
1451 ogcp1va = ogcp1[i]; in partA__align()
1672 static TLS double *ogcp1; in partA__align_variousdist() local
1738 FreeFloatVec( ogcp1 ); in partA__align_variousdist()
1879 FreeFloatVec( ogcp1 ); in partA__align_variousdist()
2018 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1[i] ); in partA__align_variousdist()
[all …]
H A DSalignmm.c1046 static TLS double *ogcp1; in A__align() local
1111 FreeFloatVec( ogcp1 ); in A__align()
1235 FreeFloatVec( ogcp1 ); in A__align()
1270 ogcp1 = AllocateFloatVec( ll1+2 ); in A__align()
1402 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1[i] ); in A__align()
1569 ogcp1va = ogcp1[i]; in A__align()
1813 static TLS double *ogcp1; in A__align_variousdist() local
1876 FreeFloatVec( ogcp1 ); in A__align_variousdist()
2027 FreeFloatVec( ogcp1 ); in A__align_variousdist()
2197 ogcp1[i] = 0.5 * ( 1.0 - ogcp1[i] ) * fpenalty * ( gapfreq1[i] ); in A__align_variousdist()
[all …]
H A DGalign11.c416 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in G__align11()
818 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in G__align11_noalign()
H A DLalign11.c416 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in L__align11()
918 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in L__align11_noalign()
H A Dgenalign11.c314 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in genL__align11()
H A DMSalign11.c435 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in MSalign11()
H A Dsuboptalign11.c316 fprintf( stderr, "ogcp1[%d]=%f\n", i, ogcp1[i] ); in suboptalign11()
H A DDalignmm.c3471 m[j] = currentw[j-1] + ogcp1[1] * gapfreq2[j-1]; mp[j] = 0;; in D__align()
5386 m[j] = currentw[j-1] + ogcp1[1] * gapfreq2[j-1]; mp[j] = 0;; in D__align_variousdist()