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Searched refs:originalSite (Results 1 – 23 of 23) sorted by relevance

/dports/www/drupal8/drupal-8.9.20/core/lib/Drupal/Core/Test/
H A DFunctionalTestSetupTrait.php108 'value' => $this->originalSite,
117 $settings_testing_file = DRUPAL_ROOT . '/' . $this->originalSite . '/settings.testing.php';
125 $settings_services_file = DRUPAL_ROOT . '/' . $this->originalSite . '/testing.services.yml';
636 $this->originalSite = $kernel->findSitePath($request);
H A DTestSetupTrait.php57 protected $originalSite; variable
/dports/www/drupal9/drupal-9.2.10/core/lib/Drupal/Core/Test/
H A DFunctionalTestSetupTrait.php98 'value' => $this->originalSite,
117 $settings_testing_file = DRUPAL_ROOT . '/' . $this->originalSite . '/settings.testing.php';
125 $settings_services_file = DRUPAL_ROOT . '/' . $this->originalSite . '/testing.services.yml';
641 $this->originalSite = $kernel->findSitePath($request);
H A DTestSetupTrait.php57 protected $originalSite; variable
/dports/biology/bbmap/bbmap/current/align2/
H A DCompareSamFiles.java97 if(parsecustom && r.originalSite==null){ in main()
120 if(parsecustom && r.originalSite==null){ in main()
226 SiteScore os=r.originalSite; in calcStatistics1()
295 SiteScore os=r.originalSite; in type()
H A DSplitMappedReads.java175 r.originalSite=null; in addRead()
H A DGradeSamFile.java115 if(parsecustom && r.originalSite==null){ in main()
H A DAbstractMapThread.java485 if(r.originalSite==null){r.makeOriginalSite();} in run()
489 if(r.mate.originalSite==null){r.mate.makeOriginalSite();} in run()
770 if(FORBID_SELF_MAPPING){forbidSelfMapping(list, r.originalSite);} in quickMap()
2664 SiteScore original=r.originalSite; in calcCorrectness()
H A DBBMapThreadPacBioSkimmer.java1704 SiteScore original=r.originalSite; in calcCorrectnessSkimmer()
/dports/www/drupal8/drupal-8.9.20/core/modules/simpletest/src/
H A DKernelTestBase.php174 $settings_services_file = DRUPAL_ROOT . '/' . $this->originalSite . '/testing.services.yml';
182 $settings_testing_file = DRUPAL_ROOT . '/' . $this->originalSite . '/settings.testing.php';
246 $settings['test_parent_site'] = $this->originalSite;
H A DTestBase.php1097 $this->originalSite = $site_path;
/dports/biology/bbmap/bbmap/current/stream/
H A DSamLine.java1865 if((r.mapped() && r.paired()) || r.originalSite!=null){ in makeOptionalTags()
1866 …optionalTags.add("X8:Z:"+r.insertSizeMapped(false)+(r.originalSite==null ? "" : ","+r.insertSizeOr… in makeOptionalTags()
1870 final SiteScore ss0=r.originalSite; in makeOptionalTags()
1883 int sites=r.numSites() + (r.originalSite==null ? 0 : 1); in makeOptionalTags()
1893 if(r.originalSite!=null){ in makeOptionalTags()
1896 sb.append(r.originalSite.toText()); in makeOptionalTags()
2004 SiteScore originalSite=null; in toRead() local
2019 originalSite=new SiteScore(trueChrom, trueStrand, trueLoc, trueStop, 0, 0); in toRead()
2094 if(originalSite!=null){ in toRead()
2095 r.originalSite=originalSite; in toRead()
[all …]
H A DRead.java1077 if(originalSite!=null){ in toText()
1080 originalSite.toBytes(bb); in toText()
1182 if(split[i].charAt(0)=='*'){r.originalSite=ss;}
1355 originalSite=ss; in toSite()
1370 originalSite=toSite(); in makeOriginalSite()
1371 return originalSite; in makeOriginalSite()
1402 setFromSite(originalSite); in setFromOriginalSite()
2900 public SiteScore originalSite; //Origin site for synthetic reads field in Read
3247 return (originalSite==null ? -1 : originalSite.stop-originalSite.start+1); in insertSizeOriginalSite()
3250 final SiteScore ssa=originalSite, ssb=mate.originalSite; in insertSizeOriginalSite()
[all …]
/dports/biology/bbmap/bbmap/current/pacbio/
H A DStackSites.java90 SiteScore original=r.originalSite; in stack()
132 SiteScore original=r2.originalSite; in stack()
H A DStackSites2.java135 SiteScore original=r.originalSite; in stack()
193 SiteScore original=r2.originalSite; in stack()
/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/jdk.compiler/share/classes/com/sun/tools/javac/comp/
H A DResolve.java3367 Type originalSite;
3372 this.originalSite = site;
3386 … types.isSubtypeUnchecked(inferenceContext.asUndetVar(argtypes.head), originalSite))) {
3388 originalSite, argtypes, typeargtypes, maxPhase);
/dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/src/jdk.compiler/share/classes/com/sun/tools/javac/comp/
H A DResolve.java3387 Type originalSite;
3392 this.originalSite = site;
3406 … types.isSubtypeUnchecked(inferenceContext.asUndetVar(argtypes.head), originalSite))) {
3408 originalSite, argtypes, typeargtypes, maxPhase);
/dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/src/jdk.compiler/share/classes/com/sun/tools/javac/comp/
H A DResolve.java3367 Type originalSite;
3372 this.originalSite = site;
3386 … types.isSubtypeUnchecked(inferenceContext.asUndetVar(argtypes.head), originalSite))) {
3388 originalSite, argtypes, typeargtypes, maxPhase);
/dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/src/jdk.compiler/share/classes/com/sun/tools/javac/comp/
H A DResolve.java3365 Type originalSite;
3370 this.originalSite = site;
3384 … types.isSubtypeUnchecked(inferenceContext.asUndetVar(argtypes.head), originalSite))) {
3386 originalSite, argtypes, typeargtypes, maxPhase);
/dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/src/jdk.compiler/share/classes/com/sun/tools/javac/comp/
H A DResolve.java3394 Type originalSite;
3399 this.originalSite = site;
3413 … types.isSubtypeUnchecked(inferenceContext.asUndetVar(argtypes.head), originalSite))) {
3415 originalSite, argtypes, typeargtypes, maxPhase);
/dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/src/jdk.compiler/share/classes/com/sun/tools/javac/comp/
H A DResolve.java3394 Type originalSite;
3399 this.originalSite = site;
3413 … types.isSubtypeUnchecked(inferenceContext.asUndetVar(argtypes.head), originalSite))) {
3415 originalSite, argtypes, typeargtypes, maxPhase);
/dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/src/jdk.compiler/share/classes/com/sun/tools/javac/comp/
H A DResolve.java3532 Type originalSite;
3537 this.originalSite = site;
3551 … types.isSubtypeUnchecked(inferenceContext.asUndetVar(argtypes.head), originalSite))) {
3553 originalSite, argtypes, typeargtypes, maxPhase);
/dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/src/jdk.compiler/share/classes/com/sun/tools/javac/comp/
H A DResolve.java3528 Type originalSite;
3533 this.originalSite = site;
3547 … types.isSubtypeUnchecked(inferenceContext.asUndetVar(argtypes.head), originalSite))) {
3549 originalSite, argtypes, typeargtypes, maxPhase);