Home
last modified time | relevance | path

Searched refs:orlgth1 (Results 1 – 9 of 9) sorted by relevance

/dports/biology/mafft/mafft-7.267-without-extensions/core/
H A DGalign11.c223 if( orlgth1 > 0 && orlgth2 > 0 ) in G__align11()
225 orlgth1 = 0; in G__align11()
247 orlgth1 = 0; in G__align11()
315 if( orlgth1 == 0 ) in G__align11()
327 if( orlgth1 > 0 && orlgth2 > 0 ) in G__align11()
375 orlgth1 = ll1 - 100; in G__align11()
395 ll1 = MAX( orlgth1, commonAlloc1 ); in G__align11()
719 if( orlgth1 > 0 && orlgth2 > 0 ) in G__align11_noalign()
721 orlgth1 = 0; in G__align11_noalign()
759 if( orlgth1 > 0 && orlgth2 > 0 ) in G__align11_noalign()
[all …]
H A DLalign11.c237 static TLS int orlgth1 = 0, orlgth2 = 0; in L__align11() local
269 if( orlgth1 > 0 && orlgth2 > 0 ) in L__align11()
271 orlgth1 = 0; in L__align11()
292 if( orlgth1 == 0 ) in L__align11()
328 if( orlgth1 > 0 && orlgth2 > 0 ) in L__align11()
374 orlgth1 = ll1 - 100; in L__align11()
395 ll1 = MAX( orlgth1, commonAlloc1 ); in L__align11()
791 if( orlgth1 > 0 && orlgth2 > 0 ) in L__align11_noalign()
793 orlgth1 = 0; in L__align11_noalign()
828 if( orlgth1 > 0 && orlgth2 > 0 ) in L__align11_noalign()
[all …]
H A Dgenalign11.c148 static TLS int orlgth1 = 0, orlgth2 = 0; in genL__align11() local
166 if( orlgth1 > 0 && orlgth2 > 0 ) in genL__align11()
168 orlgth1 = 0; in genL__align11()
200 if( orlgth1 == 0 ) in genL__align11()
210 if( lgth1 > orlgth1 || lgth2 > orlgth2 ) in genL__align11()
214 if( orlgth1 > 0 && orlgth2 > 0 ) in genL__align11()
237 ll1 = MAX( (int)(1.3*lgth1), orlgth1 ) + 100; in genL__align11()
270 orlgth1 = ll1 - 100; in genL__align11()
281 if( orlgth1 > commonAlloc1 || orlgth2 > commonAlloc2 ) in genL__align11()
291 ll1 = MAX( orlgth1, commonAlloc1 ); in genL__align11()
H A DSAalignmm.c184 static TLS int orlgth1 = 0, orlgth2 = 0; in Aalign() local
190 if( orlgth1 == 0 ) in Aalign()
199 if( lgth1 > orlgth1 || lgth2 > orlgth2 ) in Aalign()
203 if( orlgth1 > 0 && orlgth2 > 0 ) in Aalign()
223 ll1 = MAX( (int)(1.1*lgth1), orlgth1 ) + 100; in Aalign()
248 orlgth1 = ll1; in Aalign()
256 if( orlgth1 > commonAlloc1 || orlgth2 > commonAlloc2 ) in Aalign()
265 ll1 = MAX( orlgth1, commonAlloc1 ); in Aalign()
H A DMSalign11.c323 static int orlgth1 = 0, orlgth2 = 0; in MSalign11() local
325 if( orlgth1 == 0 ) in MSalign11()
335 if( lgth1 > orlgth1 || lgth2 > orlgth2 ) in MSalign11()
339 if( orlgth1 > 0 && orlgth2 > 0 ) in MSalign11()
362 ll1 = MAX( (int)(1.3*lgth1), orlgth1 ) + 100; in MSalign11()
394 orlgth1 = ll1 - 100; in MSalign11()
403 if( orlgth1 > commonAlloc1 || orlgth2 > commonAlloc2 ) in MSalign11()
413 ll1 = MAX( orlgth1, commonAlloc1 ); in MSalign11()
H A Dsuboptalign11.c164 static int orlgth1 = 0, orlgth2 = 0; in suboptalign11() local
200 if( orlgth1 == 0 ) in suboptalign11()
210 if( lgth1 > orlgth1 || lgth2 > orlgth2 ) in suboptalign11()
215 if( orlgth1 > 0 && orlgth2 > 0 ) in suboptalign11()
240 ll1 = MAX( (int)(1.3*lgth1), orlgth1 ) + 100; in suboptalign11()
272 orlgth1 = ll1 - 100; in suboptalign11()
281 if( orlgth1 > commonAlloc1 || orlgth2 > commonAlloc2 ) in suboptalign11()
292 ll1 = MAX( orlgth1, commonAlloc1 ); in suboptalign11()
H A DpartSalignmm.c1028 if( orlgth1 ) in partA__align()
1031 orlgth1 = 0; in partA__align()
1141 if( orlgth1 == 0 ) in partA__align()
1154 if( orlgth1 > 0 && orlgth2 > 0 ) in partA__align()
1225 orlgth1 = ll1 - 100; in partA__align()
1243 ll1 = MAX( orlgth1, commonAlloc1 ); in partA__align()
1717 if( orlgth1 ) in partA__align_variousdist()
1720 orlgth1 = 0; in partA__align_variousdist()
1853 if( orlgth1 == 0 ) in partA__align_variousdist()
1866 if( orlgth1 > 0 && orlgth2 > 0 ) in partA__align_variousdist()
[all …]
H A DSalignmm.c1090 if( orlgth1 ) in A__align()
1093 orlgth1 = 0; in A__align()
1209 if( orlgth1 == 0 ) in A__align()
1222 if( orlgth1 > 0 && orlgth2 > 0 ) in A__align()
1293 orlgth1 = ll1 - 100; in A__align()
1319 ll1 = MAX( orlgth1, commonAlloc1 ); in A__align()
1855 if( orlgth1 ) in A__align_variousdist()
1858 orlgth1 = 0; in A__align_variousdist()
2001 if( orlgth1 == 0 ) in A__align_variousdist()
2014 if( orlgth1 > 0 && orlgth2 > 0 ) in A__align_variousdist()
[all …]
H A DDalignmm.c2800 if( orlgth1 ) in D__align()
2803 orlgth1 = 0; in D__align()
2935 if( orlgth1 == 0 ) in D__align()
2946 if( orlgth1 > 0 && orlgth2 > 0 ) in D__align()
3021 orlgth1 = ll1 - 100; in D__align()
3229 ll1 = MAX( orlgth1, commonAlloc1 ); in D__align()
4638 if( orlgth1 ) in D__align_variousdist()
4641 orlgth1 = 0; in D__align_variousdist()
4805 if( orlgth1 == 0 ) in D__align_variousdist()
4816 if( orlgth1 > 0 && orlgth2 > 0 ) in D__align_variousdist()
[all …]