Searched refs:outAccnos (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/mothur/mothur-1.46.1/source/commands/ |
| H A D | getlineagecommand.cpp | 441 ofstream out, outAccnos; in readTax() local
443 util.openOutputFile(accnosFileName, outAccnos); in readTax()
472 outAccnos << name << endl; wroteSomething = true; in readTax()
477 outAccnos.close(); in readTax()
501 ofstream out, outAccnos; in readConsTax() local
503 util.openOutputFile(accnosFileName, outAccnos); in readConsTax()
531 wroteSomething = true; outAccnos << thisOtu.getName() << endl; in readConsTax()
537 outAccnos.close(); in readConsTax()
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| H A D | removelineagecommand.cpp | 452 ofstream out, outAccnos; in readTax() local
454 util.openOutputFile(accnosFileName, outAccnos); in readTax()
484 }else { outAccnos << name << endl; } in readTax()
488 outAccnos.close(); in readTax()
510 ofstream out, outAccnos; in readConsTax() local
512 util.openOutputFile(accnosFileName, outAccnos); in readConsTax()
545 outAccnos << thisOtu.getName() << endl; in readConsTax()
551 outAccnos.close(); in readConsTax()
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| H A D | preclustercommand.cpp | 780 ofstream outAccnos; in print() local
782 params->util.openOutputFile(outAccnosFileName, outAccnos); in print()
788 outAccnos << params->alignSeqs[i]->name << endl; in print()
793 outAccnos.close(); in print()
1255 ofstream outAccnos; util.openOutputFile(newname, outAccnos); in mergeGroupCounts() local
1256 for (int i = 0; i < namesOfSeqs.size(); i++) { outAccnos << namesOfSeqs[i] << endl; } in mergeGroupCounts()
1257 outAccnos.close(); in mergeGroupCounts()
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| H A D | splitgroupscommand.cpp | 316 ofstream outGroup, outAccnos; in driverRunNameGroup() local
318 params->util.openOutputFile(files[2]+".accnos", outAccnos); in driverRunNameGroup()
321 outAccnos << namesSeqsInThisGroup[j] << endl; in driverRunNameGroup()
323 outGroup.close(); outAccnos.close(); in driverRunNameGroup()
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| H A D | subsamplecommand.cpp | 1017 ofstream outAccnos; in getSubSampleList() local
1018 util.openOutputFile(tempAccnos, outAccnos); in getSubSampleList()
1019 …(set<string>::iterator it = subset.begin(); it != subset.end(); it++) { outAccnos << *it << endl; } in getSubSampleList()
1020 outAccnos.close(); in getSubSampleList()
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| H A D | chopseqscommand.cpp | 543 bool ChopSeqsCommand::createProcesses(string filename, string outFasta, string outAccnos, string fa… in createProcesses() argument
572 auto synchronizedAccnosFile = std::make_shared<SynchronizedOutputFile>(outAccnos); in createProcesses()
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