Searched refs:outname_ (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/bbmap/bbmap/current/align2/ |
| H A D | SplitMappedReads.java | 42 public SplitMappedReads(String fname1, String fname2, String outname_, int minChrom, int maxChrom){ in SplitMappedReads() argument
43 this(new RTextInputStream(fname1, fname2, -1), outname_, minChrom, maxChrom); in SplitMappedReads()
47 public SplitMappedReads(RTextInputStream stream_, String outname_, int minChrom, int maxChrom){ in SplitMappedReads() argument
49 outname=outname_; in SplitMappedReads()
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| /dports/biology/bbmap/bbmap/current/var/ |
| H A D | GenerateVarlets.java | 95 …public GenerateVarlets(String fname1, String fname2, String outname_, int minChrom, int maxChrom, … in GenerateVarlets() argument
96 …this(new RTextInputStream(fname1, fname2, maxReads), outname_, minChrom, maxChrom, maxReads, sites… in GenerateVarlets()
100 …public GenerateVarlets(RTextInputStream stream_, String outname_, int minChrom, int maxChrom, long… in GenerateVarlets() argument
103 outname=outname_; in GenerateVarlets()
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| H A D | GenerateVarlets2.java | 101 …public GenerateVarlets2(String fname1, String fname2, String outname_, byte minChrom, byte maxChro… in GenerateVarlets2() argument
102 …this(new RTextInputStream(fname1, fname2, maxReads), outname_, minChrom, maxChrom, maxReads, sites… in GenerateVarlets2()
106 …public GenerateVarlets2(RTextInputStream stream_, String outname_, byte minChrom, byte maxChrom, l… in GenerateVarlets2() argument
109 outname=outname_; in GenerateVarlets2()
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| H A D | GenerateVarlets3.java | 123 …public GenerateVarlets3(String fname1, String fname2, String outname_, long maxReads, String sites… in GenerateVarlets3() argument
124 …this(new RTextInputStream(fname1, fname2, maxReads), outname_, maxReads, sitesfile_, pcovFile, dis… in GenerateVarlets3()
128 …public GenerateVarlets3(RTextInputStream stream_, String outname_, long maxReads, String sitesfile… in GenerateVarlets3() argument
132 outname=outname_; in GenerateVarlets3()
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