/dports/biology/plink/plink-ng-79b2df8c/2.0/ |
H A D | plink2_compress_stream.cc | 40 …e, uint32_t do_append, __maybe_unused uint32_t thread_ct, uintptr_t overflow_buf_size, char* overf… in InitCstreamZstd() argument 61 css_ptr->output.size = CstreamWkspaceReq(overflow_buf_size); in InitCstreamZstd() 68 …t32_t do_append, uint32_t output_zst, uint32_t thread_ct, uintptr_t overflow_buf_size, char* overf… in InitCstream() argument 72 …return InitCstreamZstd(out_fname, do_append, thread_ct, overflow_buf_size, overflow_buf, compress_… in InitCstream() 75 …t32_t do_append, uint32_t output_zst, uint32_t thread_ct, uintptr_t overflow_buf_size, CompressStr… in InitCstreamAlloc() argument 77 if (unlikely(bigstack_alloc_c(overflow_buf_size, &overflow_buf))) { in InitCstreamAlloc() 82 if (unlikely(bigstack_alloc_uc(CstreamWkspaceReq(overflow_buf_size), &compress_wkspace))) { in InitCstreamAlloc() 86 …PglErr reterr = InitCstream(out_fname, do_append, output_zst, thread_ct, overflow_buf_size, overfl… in InitCstreamAlloc()
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H A D | plink2_compress_stream.h | 59 HEADER_INLINE uintptr_t CstreamWkspaceReq(uintptr_t overflow_buf_size) { in CstreamWkspaceReq() argument 60 return kCompressStreamBlock + MAXV(ZSTD_compressBound(overflow_buf_size), ZSTD_CStreamOutSize()); in CstreamWkspaceReq() 67 …t32_t do_append, uint32_t output_zst, uint32_t thread_ct, uintptr_t overflow_buf_size, char* overf… 70 …t32_t do_append, uint32_t output_zst, uint32_t thread_ct, uintptr_t overflow_buf_size, CompressStr…
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H A D | plink2_matrix_calc.cc | 4994 uintptr_t overflow_buf_size = 3 * kMaxMediumLine; in CalcPca() local 5015 if (overflow_buf_size2 > overflow_buf_size) { in CalcPca() 5016 overflow_buf_size = overflow_buf_size2; in CalcPca() 5019 uintptr_t writebuf_alloc = overflow_buf_size; in CalcPca() 5021 writebuf_alloc += CstreamWkspaceReq(overflow_buf_size); in CalcPca() 5368 …name, 0, output_zst, max_thread_ct, overflow_buf_size, writebuf, R_CAST(unsigned char*, &(writebuf… in CalcPca() 6132 uintptr_t overflow_buf_alloc = overflow_buf_size; in ScoreReport() 6134 overflow_buf_alloc += CstreamWkspaceReq(overflow_buf_size); in ScoreReport() 6670 …, 0, output_zst, max_thread_ct, overflow_buf_size, overflow_buf, R_CAST(unsigned char*, &(overflow… in ScoreReport() 7600 uintptr_t overflow_buf_size; in Vscore() local [all …]
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H A D | plink2_data.cc | 48 … const uintptr_t overflow_buf_size = kCompressStreamBlock + kMaxIdSlen + 512 + 2 * max_allele_slen; variable 49 … reterr = InitCstreamAlloc(outname, 0, output_zst, thread_ct, overflow_buf_size, &css, &cswritep); 545 if (overflow_buf_size < 2 * kCompressStreamBlock) { 546 overflow_buf_size = 2 * kCompressStreamBlock; 549 … reterr = InitCstreamAlloc(outname, 0, output_zst, thread_ct, overflow_buf_size, &css, &cswritep); 3280 … reterr = InitCstreamAlloc(outname, 0, output_zst, thread_ct, overflow_buf_size, &css, &cswritep); in WriteBimSplit() 3617 if (overflow_buf_size < 2 * kCompressStreamBlock) { in WritePvarSplit() 3618 overflow_buf_size = 2 * kCompressStreamBlock; in WritePvarSplit() 3621 … reterr = InitCstreamAlloc(outname, 0, output_zst, thread_ct, overflow_buf_size, &css, &cswritep); in WritePvarSplit() 7695 if (overflow_buf_size < 2 * kCompressStreamBlock) { [all …]
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H A D | plink2_misc.cc | 3158 …reterr = InitCstreamAlloc(outname, 0, output_zst, max_thread_ct, overflow_buf_size, &css, &cswrite… in WriteAlleleFreqs() 3609 …reterr = InitCstreamAlloc(outname, 0, output_zst, max_thread_ct, overflow_buf_size, &css, &cswrite… 4112 const uintptr_t overflow_buf_size = kCompressStreamBlock + kMaxMediumLine + pheno_ct * 2; in WriteMissingnessReports() local 4114 …reterr = InitCstreamAlloc(outname, 0, output_zst, max_thread_ct, overflow_buf_size, &css, &cswrite… in WriteMissingnessReports() 4911 uintptr_t overflow_buf_alloc = overflow_buf_size; 4913 overflow_buf_alloc += CstreamWkspaceReq(overflow_buf_size); 4957 …, 0, output_zst, max_thread_ct, overflow_buf_size, overflow_buf, R_CAST(unsigned char*, &(overflow… 5158 …, 0, output_zst, max_thread_ct, overflow_buf_size, overflow_buf, R_CAST(unsigned char*, &(overflow… 7297 uintptr_t overflow_buf_alloc = overflow_buf_size; in SampleCounts() 7299 overflow_buf_alloc += CstreamWkspaceReq(overflow_buf_size); in SampleCounts() [all …]
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H A D | plink2_adjust.cc | 204 …const uintptr_t overflow_buf_size = kCompressStreamBlock + 2 * kMaxIdSlen + 512 + 2 * max_allele_s… in Multcomp() local 208 …reterr = InitCstreamAlloc(outname, 0, output_zst, max_thread_ct, overflow_buf_size, &css, &cswrite… in Multcomp()
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H A D | plink2_import.cc | 8113 …const uintptr_t overflow_buf_size = kCompressStreamBlock + MAXV(write_chunk_ubound, kCompressStrea… in BcfToPgen() local 9649 const uintptr_t overflow_buf_size = kCompressStreamBlock + max_line_blen; in OxGenToPgen() local 9651 …reterr = InitCstreamAlloc(outname, 0, output_zst, 1, overflow_buf_size, &pvar_css, &pvar_cswritep); in OxGenToPgen() 11852 const uintptr_t overflow_buf_size = 2 * kCompressStreamBlock + kCacheline; in OxBgenToPgen() local 11853 …reterr = InitCstreamAlloc(outname, 0, output_zst, 1, overflow_buf_size, &pvar_css, &pvar_cswritep); in OxBgenToPgen() 13655 const uintptr_t overflow_buf_size = kCompressStreamBlock + max_line_blen; in OxHapslegendToPgen() local 13656 …reterr = InitCstreamAlloc(outname, 0, output_zst, 1, overflow_buf_size, &pvar_css, &pvar_cswritep); in OxHapslegendToPgen() 14760 const uintptr_t overflow_buf_size = kCompressStreamBlock + kDecompressChunkSize + max_line_blen; in Plink1DosageToPgen() local 14761 …reterr = InitCstreamAlloc(outname, 0, output_zst, 1, overflow_buf_size, &pvar_css, &pvar_cswritep); in Plink1DosageToPgen() 15578 const uintptr_t overflow_buf_size = 2 * kCompressStreamBlock; in GenerateDummy() local [all …]
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H A D | plink2_glm.cc | 5389 …uint32_t max_thread_ct, uintptr_t pgr_alloc_cacheline_ct, uintptr_t overflow_buf_size, uint32_t lo… in GlmLogistic() argument 5454 reterr = InitCstreamAlloc(outname, 0, output_zst, 1, overflow_buf_size, &css, &cswritep); in GlmLogistic() 7592 …uint32_t max_thread_ct, uintptr_t pgr_alloc_cacheline_ct, uintptr_t overflow_buf_size, uint32_t lo… in GlmLinear() argument 7656 reterr = InitCstreamAlloc(outname, 0, output_zst, 1, overflow_buf_size, &css, &cswritep); in GlmLinear() 9884 uintptr_t cstream_alloc_size = RoundUpPow2(overflow_buf_size, kCacheline); in GlmLinearBatch() 9886 cstream_alloc_size += RoundUpPow2(CstreamWkspaceReq(overflow_buf_size), kCacheline); in GlmLinearBatch() 10037 …reterr = InitCstreamAlloc(outname, 0, output_zst, 1, overflow_buf_size, &(css_arr[fidx]), &cswrite… in GlmLinearBatch() 10712 …const uintptr_t overflow_buf_size = kCompressStreamBlock + 2 * kMaxIdSlen + max_chr_blen + kMaxIdS… in GlmMain() local 11908 …, ln_pfilter, output_min_ln, max_thread_ct, pgr_alloc_cacheline_ct, overflow_buf_size, local_sampl… in GlmMain() 12546 …, ln_pfilter, output_min_ln, max_thread_ct, pgr_alloc_cacheline_ct, overflow_buf_size, local_sampl… in GlmMain() [all …]
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/dports/print/ghostscript7-x11/ghostscript-7.07/ijs/ |
H A D | ijs_server.c | 84 int overflow_buf_size; member 751 ctx->overflow_buf_size = size - (ctx->buf_size - ctx->buf_ix); in ijs_server_proc_send_data_block() 752 ctx->overflow_buf = (char *)malloc (ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 760 ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 872 int n_bytes = ctx->overflow_buf_size - ctx->overflow_buf_ix; in ijs_server_get_data() 878 if (ctx->overflow_buf_ix == ctx->overflow_buf_size) in ijs_server_get_data() 882 ctx->overflow_buf_size = 0; in ijs_server_get_data()
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/dports/print/ghostscript7-base/ghostscript-7.07/ijs/ |
H A D | ijs_server.c | 84 int overflow_buf_size; member 751 ctx->overflow_buf_size = size - (ctx->buf_size - ctx->buf_ix); in ijs_server_proc_send_data_block() 752 ctx->overflow_buf = (char *)malloc (ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 760 ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 872 int n_bytes = ctx->overflow_buf_size - ctx->overflow_buf_ix; in ijs_server_get_data() 878 if (ctx->overflow_buf_ix == ctx->overflow_buf_size) in ijs_server_get_data() 882 ctx->overflow_buf_size = 0; in ijs_server_get_data()
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/dports/print/libijs/ijs-0.35/ |
H A D | ijs_server.c | 84 int overflow_buf_size; member 751 ctx->overflow_buf_size = size - (ctx->buf_size - ctx->buf_ix); in ijs_server_proc_send_data_block() 752 ctx->overflow_buf = (char *)malloc (ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 760 ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 872 int n_bytes = ctx->overflow_buf_size - ctx->overflow_buf_ix; in ijs_server_get_data() 878 if (ctx->overflow_buf_ix == ctx->overflow_buf_size) in ijs_server_get_data() 882 ctx->overflow_buf_size = 0; in ijs_server_get_data()
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/dports/print/hplip/hplip-3.20.6/prnt/hpijs/ |
H A D | ijs_server.c | 84 int overflow_buf_size; member 751 ctx->overflow_buf_size = size - (ctx->buf_size - ctx->buf_ix); in ijs_server_proc_send_data_block() 752 ctx->overflow_buf = (char *)malloc (ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 760 ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 872 int n_bytes = ctx->overflow_buf_size - ctx->overflow_buf_ix; in ijs_server_get_data() 878 if (ctx->overflow_buf_ix == ctx->overflow_buf_size) in ijs_server_get_data() 882 ctx->overflow_buf_size = 0; in ijs_server_get_data()
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/dports/print/ghostscript8-x11/ghostscript-8.71/ijs/ |
H A D | ijs_server.c | 84 int overflow_buf_size; member 763 ctx->overflow_buf_size = size - (ctx->buf_size - ctx->buf_ix); in ijs_server_proc_send_data_block() 764 ctx->overflow_buf = (char *)malloc (ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 772 ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 884 int n_bytes = ctx->overflow_buf_size - ctx->overflow_buf_ix; in ijs_server_get_data() 890 if (ctx->overflow_buf_ix == ctx->overflow_buf_size) in ijs_server_get_data() 894 ctx->overflow_buf_size = 0; in ijs_server_get_data()
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/dports/print/ghostscript9-x11/ghostscript-9.06/ijs/ |
H A D | ijs_server.c | 84 int overflow_buf_size; member 763 ctx->overflow_buf_size = size - (ctx->buf_size - ctx->buf_ix); in ijs_server_proc_send_data_block() 764 ctx->overflow_buf = (char *)malloc (ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 772 ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 884 int n_bytes = ctx->overflow_buf_size - ctx->overflow_buf_ix; in ijs_server_get_data() 890 if (ctx->overflow_buf_ix == ctx->overflow_buf_size) in ijs_server_get_data() 894 ctx->overflow_buf_size = 0; in ijs_server_get_data()
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/dports/print/ghostscript9-base/ghostscript-9.06/ijs/ |
H A D | ijs_server.c | 84 int overflow_buf_size; member 763 ctx->overflow_buf_size = size - (ctx->buf_size - ctx->buf_ix); in ijs_server_proc_send_data_block() 764 ctx->overflow_buf = (char *)malloc (ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 772 ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 884 int n_bytes = ctx->overflow_buf_size - ctx->overflow_buf_ix; in ijs_server_get_data() 890 if (ctx->overflow_buf_ix == ctx->overflow_buf_size) in ijs_server_get_data() 894 ctx->overflow_buf_size = 0; in ijs_server_get_data()
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/dports/print/ghostscript8-base/ghostscript-8.71/ijs/ |
H A D | ijs_server.c | 84 int overflow_buf_size; member 763 ctx->overflow_buf_size = size - (ctx->buf_size - ctx->buf_ix); in ijs_server_proc_send_data_block() 764 ctx->overflow_buf = (char *)malloc (ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 772 ctx->overflow_buf_size); in ijs_server_proc_send_data_block() 884 int n_bytes = ctx->overflow_buf_size - ctx->overflow_buf_ix; in ijs_server_get_data() 890 if (ctx->overflow_buf_ix == ctx->overflow_buf_size) in ijs_server_get_data() 894 ctx->overflow_buf_size = 0; in ijs_server_get_data()
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/dports/lang/erlang-runtime24/otp-OTP-24.1.7/erts/lib_src/common/ |
H A D | erl_memory_trace_parser.c | 142 size_t overflow_buf_size; member 293 statep->overflow_buf_size = DEFAULT_OVERFLOW_BUF_SZ; in emtp_state_new() 1697 if (sz > statep->overflow_buf_size) { in emtp_parse() 1702 statep->overflow_buf_size = buf_sz; in emtp_parse() 1800 if (sz > statep->overflow_buf_size) { in emtp_parse() 1804 statep->overflow_buf_size = 0; in emtp_parse() 1807 statep->overflow_buf_size = sz; in emtp_parse()
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/dports/lang/erlang-runtime22/otp-OTP-22.3.4.24/erts/lib_src/common/ |
H A D | erl_memory_trace_parser.c | 142 size_t overflow_buf_size; member 293 statep->overflow_buf_size = DEFAULT_OVERFLOW_BUF_SZ; in emtp_state_new() 1697 if (sz > statep->overflow_buf_size) { in emtp_parse() 1702 statep->overflow_buf_size = buf_sz; in emtp_parse() 1800 if (sz > statep->overflow_buf_size) { in emtp_parse() 1804 statep->overflow_buf_size = 0; in emtp_parse() 1807 statep->overflow_buf_size = sz; in emtp_parse()
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/dports/lang/erlang-runtime23/otp-OTP-23.3.4.10/erts/lib_src/common/ |
H A D | erl_memory_trace_parser.c | 142 size_t overflow_buf_size; member 293 statep->overflow_buf_size = DEFAULT_OVERFLOW_BUF_SZ; in emtp_state_new() 1697 if (sz > statep->overflow_buf_size) { in emtp_parse() 1702 statep->overflow_buf_size = buf_sz; in emtp_parse() 1800 if (sz > statep->overflow_buf_size) { in emtp_parse() 1804 statep->overflow_buf_size = 0; in emtp_parse() 1807 statep->overflow_buf_size = sz; in emtp_parse()
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/dports/lang/erlang-wx/otp-OTP-24.1.7/erts/lib_src/common/ |
H A D | erl_memory_trace_parser.c | 142 size_t overflow_buf_size; member 293 statep->overflow_buf_size = DEFAULT_OVERFLOW_BUF_SZ; in emtp_state_new() 1697 if (sz > statep->overflow_buf_size) { in emtp_parse() 1702 statep->overflow_buf_size = buf_sz; in emtp_parse() 1800 if (sz > statep->overflow_buf_size) { in emtp_parse() 1804 statep->overflow_buf_size = 0; in emtp_parse() 1807 statep->overflow_buf_size = sz; in emtp_parse()
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/dports/lang/erlang/otp-OTP-24.1.7/erts/lib_src/common/ |
H A D | erl_memory_trace_parser.c | 142 size_t overflow_buf_size; member 293 statep->overflow_buf_size = DEFAULT_OVERFLOW_BUF_SZ; in emtp_state_new() 1697 if (sz > statep->overflow_buf_size) { in emtp_parse() 1702 statep->overflow_buf_size = buf_sz; in emtp_parse() 1800 if (sz > statep->overflow_buf_size) { in emtp_parse() 1804 statep->overflow_buf_size = 0; in emtp_parse() 1807 statep->overflow_buf_size = sz; in emtp_parse()
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/dports/lang/erlang-java/otp-OTP-24.1.7/erts/lib_src/common/ |
H A D | erl_memory_trace_parser.c | 142 size_t overflow_buf_size; member 293 statep->overflow_buf_size = DEFAULT_OVERFLOW_BUF_SZ; in emtp_state_new() 1697 if (sz > statep->overflow_buf_size) { in emtp_parse() 1702 statep->overflow_buf_size = buf_sz; in emtp_parse() 1800 if (sz > statep->overflow_buf_size) { in emtp_parse() 1804 statep->overflow_buf_size = 0; in emtp_parse() 1807 statep->overflow_buf_size = sz; in emtp_parse()
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/dports/lang/erlang-runtime21/otp-OTP-21.3.8.24/erts/lib_src/common/ |
H A D | erl_memory_trace_parser.c | 142 size_t overflow_buf_size; member 293 statep->overflow_buf_size = DEFAULT_OVERFLOW_BUF_SZ; in emtp_state_new() 1697 if (sz > statep->overflow_buf_size) { in emtp_parse() 1702 statep->overflow_buf_size = buf_sz; in emtp_parse() 1800 if (sz > statep->overflow_buf_size) { in emtp_parse() 1804 statep->overflow_buf_size = 0; in emtp_parse() 1807 statep->overflow_buf_size = sz; in emtp_parse()
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/dports/biology/plink/plink-ng-79b2df8c/2.0/include/ |
H A D | plink2_bgzf.cc | 401 const uint32_t overflow_buf_size = kMaxBgzfDecompressedBlockSize * (decompress_thread_ct + 1); in BgzfRawMtStreamInit() local 403 …if (unlikely(cachealigned_malloc(2 * (cwr_aligned_size + cwd_aligned_size + overflow_buf_size), &r… in BgzfRawMtStreamInit() 415 raw_alloc = &(raw_alloc[overflow_buf_size]); in BgzfRawMtStreamInit()
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