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/dports/lang/mono/mono-5.10.1.57/external/corert/src/System.Private.CoreLib/shared/System/
H A DString.Searching.cs92 pCh += 4; in IndexOf()
101 pCh++; in IndexOf()
106 ReturnIndex3: pCh++; in IndexOf()
107 ReturnIndex2: pCh++; in IndexOf()
108 ReturnIndex1: pCh++; in IndexOf()
181 pCh += 2; in IndexOfAny()
202 pCh++; in IndexOfAny()
234 pCh++; in IndexOfCharArray()
419 pCh -= 4; in LastIndexOf()
428 pCh--; in LastIndexOf()
[all …]
/dports/lang/mono/mono-5.10.1.57/external/corefx/src/Common/src/CoreLib/System/
H A DString.Searching.cs92 pCh += 4; in IndexOf()
101 pCh++; in IndexOf()
106 ReturnIndex3: pCh++; in IndexOf()
107 ReturnIndex2: pCh++; in IndexOf()
108 ReturnIndex1: pCh++; in IndexOf()
181 pCh += 2; in IndexOfAny()
202 pCh++; in IndexOfAny()
234 pCh++; in IndexOfCharArray()
419 pCh -= 4; in LastIndexOf()
428 pCh--; in LastIndexOf()
[all …]
/dports/biology/star/STAR-2.7.9a/source/
H A DChimericDetection_chimericDetectionMult.cpp13 …if (seg1.roE > seg1.P.pCh.segmentMin + seg1.roS + chimOverlap && seg2.roE > seg1.P.pCh.segmentMin … in chimericAlignScore()
14 …&& ( diffMates || ( (seg1.roE + seg1.P.pCh.segmentReadGapMax + 1) >= seg2.roS && (seg2.roE + seg1.… in chimericAlignScore()
44 int minScoreToConsider = P.pCh.scoreMin; in chimericDetectionMult()
47 if ((maxPossibleAlignScore - P.pCh.scoreDropMax) > minScoreToConsider) in chimericDetectionMult()
48 minScoreToConsider = maxPossibleAlignScore - P.pCh.scoreDropMax; in chimericDetectionMult()
87 … if ((chimScoreBest - (int)P.pCh.multimapScoreRange) > minScoreToConsider) in chimericDetectionMult()
89 … minScoreToConsider = chimScoreBest - (int)P.pCh.multimapScoreRange; in chimericDetectionMult()
114 if (chimN > P.pCh.multimapNmax) //too many loci in chimericDetectionMult()
121 if (P.pCh.out.junctions) in chimericDetectionMult()
124 if (P.pCh.out.bam) { in chimericDetectionMult()
H A DReadAlign_chimericDetectionOld.cpp14 if (nTr>P.pCh.mainSegmentMultNmax && nTr!=2) in chimericDetectionOld()
19 if ( !(P.pCh.segmentMin>0 && trBest->rLength >= P.pCh.segmentMin \ in chimericDetectionOld()
21 || trBest->exons[0][EX_R] >= P.pCh.segmentMin ) \ in chimericDetectionOld()
70 …if (roEnd1 > P.pCh.segmentMin + roStart1 + chimOverlap && roEnd2> P.pCh.segmentMin + roStart2 + ch… in chimericDetectionOld()
71 …&& ( diffMates || ( (roEnd1 + P.pCh.segmentReadGapMax + 1) >= roStart2 && (roEnd2 + P.pCh.segmentR… in chimericDetectionOld()
99 …if (!(chimScoreBest >= P.pCh.scoreMin && chimScoreBest+P.pCh.scoreDropMax >= (int) (readLength[0]+… in chimericDetectionOld()
103 if (nTr>P.pCh.mainSegmentMultNmax) {//check main segment for multi-aligns in chimericDetectionOld()
145 …if (!(trChim[0].exons[e0][EX_L]>=P.pCh.junctionOverhangMin && trChim[1].exons[e1][EX_L]>=P.pCh.jun… in chimericDetectionOld()
232 chimScoreBest += 1+P.pCh.scoreJunctionNonGTAG; //+1 in chimericDetectionOld()
233 …if ( !(chimScoreBest >= P.pCh.scoreMin && chimScoreBest+P.pCh.scoreDropMax >= (int) (readLength[0]… in chimericDetectionOld()
[all …]
H A DChimericAlign.cpp4 …g1(seg1in), seg2(seg2in),chimScore(chimScoreIn), RA(RAin), P(seg1in.P), pCh(P.pCh), mapGen(genomeI… in ChimericAlign()
29 …ons[ex2][EX_iFrag] || (al1->exons[ex1][EX_L] >= pCh.junctionOverhangMin && al2->exons[ex2][EX_L] … in chimericCheck()
H A DReadAlign_chimericDetectionPEmerged.cpp8 if (P.pCh.segmentMin==0) {//no chimeric detection requested in chimericDetectionPEmerged()
12 if (P.pCh.multimapNmax==0) { in chimericDetectionPEmerged()
27 …} else if (trBest->maxScore <= (int) (readLength[0]+readLength[1]) - (int) P.pCh.nonchimScoreDropM… in chimericDetectionPEmerged()
H A DChimericSegment.cpp3 ChimericSegment::ChimericSegment(Parameters &Pin, Transcript &alignIn) : P(Pin), pCh(Pin.pCh), alig… in ChimericSegment()
22 segGood = segGood && align.rLength >= pCh.segmentMin; //mapped length >= chim segmentMin in segmentCheck()
H A DReadAlign_chimericDetection.cpp20 if (P.pCh.segmentMin==0) {//no chimeric detection requested in chimericDetection()
45 if (P.pCh.multimapNmax==0) { in chimericDetection()
48 …} else if (trBest->maxScore <= (int) (readLength[0]+readLength[1]) - (int) P.pCh.nonchimScoreDropM… in chimericDetection()
H A DReadAlign_chimericDetectionOldOutput.cpp15 if (P.pCh.out.bam) //BAM output in chimericDetectionOldOutput()
18 if (P.pCh.out.samOld) { in chimericDetectionOldOutput()
61 if (P.pCh.out.junctions) { in chimericDetectionOldOutput()
H A DChimericAlign_chimericStitching.cpp63 …if ( ( P.pCh.filter.genomicN && (b0>3 || b1>3) ) || bR>3) {//chimera is not called if there are Ns… in chimericStitching()
105 jScoreJ =jMotif==0 ? jScore + P.pCh.scoreJunctionNonGTAG : jScore ; in chimericStitching()
173 …if (chimMotif>=0 && (a1.exons[ex1][EX_L]<P.pCh.junctionOverhangMin || a2.exons[ex2][EX_L]<P.pCh.ju… in chimericStitching()
180 …chimScore=a1.alignScore(Read1,genSeq,P) + a2.alignScore(Read1,genSeq,P) + (chimMotif==0 ? P.pCh.sc… in chimericStitching()
H A DReadAlignChunk.cpp83 if (P.pCh.segmentMin>0) { in ReadAlignChunk()
84 if (P.pCh.out.samOld) { in ReadAlignChunk()
87 if (P.pCh.out.junctions) { in ReadAlignChunk()
H A DParameters.cpp223 …parArray.push_back(new ParameterInfoScalar <uint> (-1, -1, "chimSegmentMin", &pCh.segmentMin… in Parameters()
224 … parArray.push_back(new ParameterInfoScalar <int> (-1, -1, "chimScoreMin", &pCh.scoreMin)); in Parameters()
225 …parArray.push_back(new ParameterInfoScalar <int> (-1, -1, "chimScoreDropMax", &pCh.scoreDro… in Parameters()
226 …parArray.push_back(new ParameterInfoScalar <int> (-1, -1, "chimScoreSeparation", &pCh.score… in Parameters()
228 …(new ParameterInfoScalar <uint> (-1, -1, "chimMainSegmentMultNmax", &pCh.mainSegmentMultNmax… in Parameters()
230 parArray.push_back(new ParameterInfoVector <string> (-1, -1, "chimOutType", &pCh.out.type)); in Parameters()
231 …parArray.push_back(new ParameterInfoVector <string> (-1, -1, "chimFilter", &pCh.filter.stringI… in Parameters()
232 …parArray.push_back(new ParameterInfoScalar <uint> (-1, -1, "chimSegmentReadGapMax", &pCh.seg… in Parameters()
233 …parArray.push_back(new ParameterInfoScalar <uint> (-1, -1, "chimMultimapNmax", &pCh.multimap… in Parameters()
234 …parArray.push_back(new ParameterInfoScalar <uint> (-1, -1, "chimMultimapScoreRange", &pCh.mu… in Parameters()
[all …]
/dports/cad/ngspice_rework/ngspice-35/src/ciderlib/twod/
H A Dtwopcont.c164 for ( pCh = pDevice->pChannel; pCh != NULL; in TWOPjacBuild()
165 pCh = pCh->next ) { in TWOPjacBuild()
394 for ( pCh = pDevice->pChannel; pCh != NULL; in TWOPsysLoad()
395 pCh = pCh->next ) { in TWOPsysLoad()
398 ds = pCh->pNElem->dy / pCh->pNElem->epsRel; in TWOPsysLoad()
400 ds = pCh->pNElem->dx / pCh->pNElem->epsRel; in TWOPsysLoad()
531 for ( pCh = pDevice->pChannel; pCh != NULL; in TWOPjacLoad()
532 pCh = pCh->next ) { in TWOPjacLoad()
535 ds = pCh->pNElem->dy / pCh->pNElem->epsRel; in TWOPjacLoad()
537 ds = pCh->pNElem->dx / pCh->pNElem->epsRel; in TWOPjacLoad()
[all …]
H A Dtwoncont.c165 for ( pCh = pDevice->pChannel; pCh != NULL; in TWONjacBuild()
166 pCh = pCh->next ) { in TWONjacBuild()
395 for ( pCh = pDevice->pChannel; pCh != NULL; in TWONsysLoad()
396 pCh = pCh->next ) { in TWONsysLoad()
399 ds = pCh->pNElem->dy / pCh->pNElem->epsRel; in TWONsysLoad()
401 ds = pCh->pNElem->dx / pCh->pNElem->epsRel; in TWONsysLoad()
533 for ( pCh = pDevice->pChannel; pCh != NULL; in TWONjacLoad()
534 pCh = pCh->next ) { in TWONjacLoad()
537 ds = pCh->pNElem->dy / pCh->pNElem->epsRel; in TWONjacLoad()
539 ds = pCh->pNElem->dx / pCh->pNElem->epsRel; in TWONjacLoad()
[all …]
H A Dtwocont.c198 for ( pCh = pDevice->pChannel; pCh != NULL; in TWO_jacBuild()
199 pCh = pCh->next ) { in TWO_jacBuild()
484 for ( pCh = pDevice->pChannel; pCh != NULL; in TWO_sysLoad()
485 pCh = pCh->next ) { in TWO_sysLoad()
488 ds = pCh->pNElem->dy / pCh->pNElem->epsRel; in TWO_sysLoad()
490 ds = pCh->pNElem->dx / pCh->pNElem->epsRel; in TWO_sysLoad()
644 for ( pCh = pDevice->pChannel; pCh != NULL; in TWO_jacLoad()
645 pCh = pCh->next ) { in TWO_jacLoad()
648 ds = pCh->pNElem->dy / pCh->pNElem->epsRel; in TWO_jacLoad()
650 ds = pCh->pNElem->dx / pCh->pNElem->epsRel; in TWO_jacLoad()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/
H A Dcapitalization_string.cpp1038 char &pCh = result[i]; in ResetCapitalization() local
1039 … if (was_digit && (pCh == 'S' || pCh == 's') && (i+1 >= result.size()-1 || isspace(result[i+1]))) in ResetCapitalization()
1041 pCh = toupper (pCh); in ResetCapitalization()
1044 else if (isdigit (pCh)) in ResetCapitalization()
1051 pCh = tolower (pCh); in ResetCapitalization()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/cleanup/
H A Dcapitalization_string.cpp1038 char &pCh = result[i]; in ResetCapitalization() local
1039 … if (was_digit && (pCh == 'S' || pCh == 's') && (i+1 >= result.size()-1 || isspace(result[i+1]))) in ResetCapitalization()
1041 pCh = toupper (pCh); in ResetCapitalization()
1044 else if (isdigit (pCh)) in ResetCapitalization()
1051 pCh = tolower (pCh); in ResetCapitalization()
/dports/net-mgmt/zabbix3-proxy/zabbix-3.0.32/src/zabbix_agent/
H A Deventlog.c280 …ar_t *pEventMessageFile = NULL, *pParamMessageFile = NULL, *pFile = NULL, *pNextFile = NULL, *pCh, in zbx_get_eventlog_message() local
321 pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
325 aInsertStrings[i] = pCh; in zbx_get_eventlog_message()
326 pCh += wcslen(pCh) + 1; in zbx_get_eventlog_message()
373 for (i = 0, pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
375 i++, pCh += wcslen(pCh) + 1) in zbx_get_eventlog_message()
380 buf = zbx_unicode_to_utf8(pCh); in zbx_get_eventlog_message()
/dports/net-mgmt/zabbix3-frontend/zabbix-3.0.32/src/zabbix_agent/
H A Deventlog.c280 …ar_t *pEventMessageFile = NULL, *pParamMessageFile = NULL, *pFile = NULL, *pNextFile = NULL, *pCh, in zbx_get_eventlog_message() local
321 pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
325 aInsertStrings[i] = pCh; in zbx_get_eventlog_message()
326 pCh += wcslen(pCh) + 1; in zbx_get_eventlog_message()
373 for (i = 0, pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
375 i++, pCh += wcslen(pCh) + 1) in zbx_get_eventlog_message()
380 buf = zbx_unicode_to_utf8(pCh); in zbx_get_eventlog_message()
/dports/net-mgmt/zabbix3-java/zabbix-3.0.32/src/zabbix_agent/
H A Deventlog.c280 …ar_t *pEventMessageFile = NULL, *pParamMessageFile = NULL, *pFile = NULL, *pNextFile = NULL, *pCh, in zbx_get_eventlog_message() local
321 pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
325 aInsertStrings[i] = pCh; in zbx_get_eventlog_message()
326 pCh += wcslen(pCh) + 1; in zbx_get_eventlog_message()
373 for (i = 0, pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
375 i++, pCh += wcslen(pCh) + 1) in zbx_get_eventlog_message()
380 buf = zbx_unicode_to_utf8(pCh); in zbx_get_eventlog_message()
/dports/net-mgmt/zabbix3-server/zabbix-3.0.32/src/zabbix_agent/
H A Deventlog.c280 …ar_t *pEventMessageFile = NULL, *pParamMessageFile = NULL, *pFile = NULL, *pNextFile = NULL, *pCh, in zbx_get_eventlog_message() local
321 pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
325 aInsertStrings[i] = pCh; in zbx_get_eventlog_message()
326 pCh += wcslen(pCh) + 1; in zbx_get_eventlog_message()
373 for (i = 0, pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
375 i++, pCh += wcslen(pCh) + 1) in zbx_get_eventlog_message()
380 buf = zbx_unicode_to_utf8(pCh); in zbx_get_eventlog_message()
/dports/net-mgmt/zabbix3-agent/zabbix-3.0.32/src/zabbix_agent/
H A Deventlog.c280 …ar_t *pEventMessageFile = NULL, *pParamMessageFile = NULL, *pFile = NULL, *pNextFile = NULL, *pCh, in zbx_get_eventlog_message() local
321 pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
325 aInsertStrings[i] = pCh; in zbx_get_eventlog_message()
326 pCh += wcslen(pCh) + 1; in zbx_get_eventlog_message()
373 for (i = 0, pCh = (wchar_t *)((unsigned char *)pELR + pELR->StringOffset); in zbx_get_eventlog_message()
375 i++, pCh += wcslen(pCh) + 1) in zbx_get_eventlog_message()
380 buf = zbx_unicode_to_utf8(pCh); in zbx_get_eventlog_message()
/dports/games/avp/avp-20170505/src/win95/
H A Dio.c1074 char* pCh=&TextprintBuffer[0]; in DHM_MoveBufferToQueue() local
1079 ((*pCh)!='\0') in DHM_MoveBufferToQueue()
1084 switch (*pCh) in DHM_MoveBufferToQueue()
1098 DHM_AddToQueue(*pPosX,(*pPosY)+textprint_Y_offset, *pCh); in DHM_MoveBufferToQueue()
1100 (*pPosX)+=AAFontWidths[(unsigned char)*pCh];//CharWidthInPixels(*pCh); in DHM_MoveBufferToQueue()
1113 pCh++; in DHM_MoveBufferToQueue()
/dports/net/mpich2/mpich2-1.5/src/pm/smpd/
H A Dsmpd_launch_process.c1431 const char *pCh; in smpd_parse_account_domain() local
1440 while ((*pCh != '@') && (*pCh != '\0')) in smpd_parse_account_domain()
1442 *pCh2 = *pCh; in smpd_parse_account_domain()
1443 pCh++; in smpd_parse_account_domain()
1447 if (*pCh == '@') in smpd_parse_account_domain()
1449 pCh++; in smpd_parse_account_domain()
1461 while ((*pCh != '\\') && (*pCh != '\0')) in smpd_parse_account_domain()
1463 *pCh2 = *pCh; in smpd_parse_account_domain()
1464 pCh++; in smpd_parse_account_domain()
1467 if (*pCh == '\\') in smpd_parse_account_domain()
[all …]
/dports/science/cdk/cdk-cdk-2.3/tool/charges/src/main/java/org/openscience/cdk/charges/
H A DInductivePartialCharges.java92 double[] pCh = new double[atoms.length * (stepsLimit + 1)]; in assignInductivePartialCharges() local
103 … pCh[a + (s * atoms.length)] = pChInch[a + (s * atoms.length)] + pCh[a + ((s - 1) * atoms.length)]; in assignInductivePartialCharges()
107 … atoms[a].setProperty("InductivePartialCharge", new Double(pCh[a + (s * atoms.length)])); in assignInductivePartialCharges()

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