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Searched refs:pFeature (Results 1 – 25 of 74) sorted by relevance

123

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/import/ftable/
H A Dgff3_annot_assembler.cpp81 auto pFeature = record.GetData(); in ProcessRecord() local
83 switch (pFeature->GetData().GetSubtype()) { in ProcessRecord()
105 CRef<CSeq_feat> pFeature, in xProcessFeatureDefault() argument
110 pFeature->GetData().GetSubtype()); in xProcessFeatureDefault()
115 mFeatureMap.AddFeature(recordId, pFeature); in xProcessFeatureDefault()
125 CRef<CSeq_feat> pFeature, in xProcessFeatureCds() argument
177 CRef<CSeq_feat> pFeature, in xProcessFeatureRna() argument
190 xMarkLocationPending(*pFeature); in xProcessFeatureRna()
210 CRef<CSeq_feat> pFeature, in xProcessFeatureExon() argument
268 for (auto& pFeature: ftable) { in FinalizeAnnot() local
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H A Dgtf_annot_assembler.cpp423 CRef<CSeq_feat>& pFeature, in xAnnotAddFeature() argument
445 CRef<CSeq_feat>& pFeature) in xFeatureSetGene() argument
459 CRef<CSeq_feat>& pFeature) in xFeatureSetMrna() argument
469 CRef<CSeq_feat>& pFeature) in xFeatureSetCds() argument
472 pFeature->SetData().SetCdregion(); in xFeatureSetCds()
482 CRef<CSeq_feat>& pFeature) in xFeatureSetFeatId() argument
505 CRef<CSeq_feat>& pFeature) in xFeatureSetLocation() argument
509 pFeature->SetLocation().SetNull() : in xFeatureSetLocation()
517 CRef<CSeq_feat>& pFeature) in xFeatureUpdateLocation() argument
529 CRef<CSeq_feat>& pFeature) in xFeatureSetQualifiers() argument
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H A Dgff3_annot_assembler.hpp63 CRef<CSeq_feat> pFeature) in AddFeature() argument
69 mMap[id] = pFeature; in AddFeature()
100 CRef<CSeq_feat> pFeature) in AddFeature() argument
107 auto itFeature = find(feats.begin(), feats.end(), pFeature); in AddFeature()
109 feats.push_back(pFeature); in AddFeature()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/
H A Dgff2_data.cpp510 CRef<CSeq_feat> pFeature, in InitializeFeature() argument
523 CRef<CSeq_feat> pFeature, in UpdateFeature() argument
548 CRef<CSeq_feat> pFeature, in xUpdateFeatureData() argument
591 CRef<CSeq_feat> pFeature ) const in xMigrateAttributes()
677 pFeature->SetExcept(true); in xMigrateAttributes()
815 pFeature->SetPseudo(true); in xMigrateAttributes()
917 CRef<CSeq_feat> pFeature, in xMigrateAttributeSingle() argument
939 CRef<CSeq_feat> pFeature, in xMigrateAttributeDefault() argument
968 CRef<CSeq_feat> pFeature, in xMigrateAttributesOrgName() argument
1035 CRef<CSeq_feat> pFeature, in xMigrateAttributesGo() argument
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H A Dgff3_reader.cpp454 CRef<CSeq_feat> pFeature, in xUpdateAnnotExon() argument
532 CRef<CSeq_feat> pFeature, in xUpdateAnnotCds() argument
550 m_MapIdToFeature[cdsId] = pFeature; in xUpdateAnnotCds()
570 CRef<CSeq_feat> pFeature) in xFeatureSetXrefGrandParent() argument
667 CRef<CSeq_feat> pFeature, in xUpdateAnnotGeneric() argument
723 if (pFeature->GetData().IsRna() || in xUpdateAnnotGeneric()
735 CRef<CSeq_feat> pFeature, in xUpdateAnnotMrna() argument
796 CRef<CSeq_feat> pFeature, in xUpdateAnnotGene() argument
829 CRef<CSeq_feat> pFeature, in xUpdateAnnotRegion() argument
851 CRef< CSeq_feat > pFeature, in xAddFeatureToAnnot()
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H A Dgff_base_columns.cpp134 CRef<CSeq_feat> pFeature, in InitializeFeature() argument
138 if (!xInitFeatureLocation(flags, pFeature, seqidresolve)) { in InitializeFeature()
141 if (!xInitFeatureData(flags, pFeature)) { in InitializeFeature()
144 return xInitFeatureId(flags, pFeature); in InitializeFeature()
150 CRef<CSeq_feat> pFeature ) const in xInitFeatureId()
156 pFeature->SetId(*pFeatId); in xInitFeatureId()
163 CRef<CSeq_feat> pFeature, in xInitFeatureLocation() argument
167 pFeature->SetLocation(*GetSeqLoc(flags, seqidresolve)); in xInitFeatureLocation()
174 CRef<CSeq_feat> pFeature ) const in xInitFeatureData()
177 CSeqFeatData::ESubtype subtype = pFeature->GetData().GetSubtype(); in xInitFeatureData()
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H A Dgtf_reader.cpp325 CRef<CSeq_feat> pFeature( new CSeq_feat ); in xCreateParentGene() local
327 if (!xFeatureSetDataGene(gff, *pFeature)) { in xCreateParentGene()
340 m_MapIdToFeature[featId] = pFeature; in xCreateParentGene()
341 xAddFeatureToAnnot(pFeature, annot); in xCreateParentGene()
443 CRef<CSeq_feat> pFeature(new CSeq_feat); in xCreateParentCds() local
445 if (!xFeatureSetDataCds(gff, *pFeature)) { in xCreateParentCds()
454 m_MapIdToFeature[featId] = pFeature; in xCreateParentCds()
455 return xAddFeatureToAnnot(pFeature, annot); in xCreateParentCds()
471 if (!xFeatureSetDataMrna(gff, *pFeature)) { in xCreateParentMrna()
482 m_MapIdToFeature[featId] = pFeature; in xCreateParentMrna()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/
H A Dgff2_data.cpp510 CRef<CSeq_feat> pFeature, in InitializeFeature() argument
523 CRef<CSeq_feat> pFeature, in UpdateFeature() argument
548 CRef<CSeq_feat> pFeature, in xUpdateFeatureData() argument
591 CRef<CSeq_feat> pFeature ) const in xMigrateAttributes()
677 pFeature->SetExcept(true); in xMigrateAttributes()
815 pFeature->SetPseudo(true); in xMigrateAttributes()
917 CRef<CSeq_feat> pFeature, in xMigrateAttributeSingle() argument
939 CRef<CSeq_feat> pFeature, in xMigrateAttributeDefault() argument
968 CRef<CSeq_feat> pFeature, in xMigrateAttributesOrgName() argument
1035 CRef<CSeq_feat> pFeature, in xMigrateAttributesGo() argument
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H A Dgff3_reader.cpp454 CRef<CSeq_feat> pFeature, in xUpdateAnnotExon() argument
532 CRef<CSeq_feat> pFeature, in xUpdateAnnotCds() argument
550 m_MapIdToFeature[cdsId] = pFeature; in xUpdateAnnotCds()
570 CRef<CSeq_feat> pFeature) in xFeatureSetXrefGrandParent() argument
667 CRef<CSeq_feat> pFeature, in xUpdateAnnotGeneric() argument
723 if (pFeature->GetData().IsRna() || in xUpdateAnnotGeneric()
735 CRef<CSeq_feat> pFeature, in xUpdateAnnotMrna() argument
796 CRef<CSeq_feat> pFeature, in xUpdateAnnotGene() argument
829 CRef<CSeq_feat> pFeature, in xUpdateAnnotRegion() argument
851 CRef< CSeq_feat > pFeature, in xAddFeatureToAnnot()
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H A Dgff_base_columns.cpp134 CRef<CSeq_feat> pFeature, in InitializeFeature() argument
138 if (!xInitFeatureLocation(flags, pFeature, seqidresolve)) { in InitializeFeature()
141 if (!xInitFeatureData(flags, pFeature)) { in InitializeFeature()
144 return xInitFeatureId(flags, pFeature); in InitializeFeature()
150 CRef<CSeq_feat> pFeature ) const in xInitFeatureId()
156 pFeature->SetId(*pFeatId); in xInitFeatureId()
163 CRef<CSeq_feat> pFeature, in xInitFeatureLocation() argument
167 pFeature->SetLocation(*GetSeqLoc(flags, seqidresolve)); in xInitFeatureLocation()
174 CRef<CSeq_feat> pFeature ) const in xInitFeatureData()
177 CSeqFeatData::ESubtype subtype = pFeature->GetData().GetSubtype(); in xInitFeatureData()
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H A Dgtf_reader.cpp325 CRef<CSeq_feat> pFeature( new CSeq_feat ); in xCreateParentGene() local
327 if (!xFeatureSetDataGene(gff, *pFeature)) { in xCreateParentGene()
340 m_MapIdToFeature[featId] = pFeature; in xCreateParentGene()
341 xAddFeatureToAnnot(pFeature, annot); in xCreateParentGene()
443 CRef<CSeq_feat> pFeature(new CSeq_feat); in xCreateParentCds() local
445 if (!xFeatureSetDataCds(gff, *pFeature)) { in xCreateParentCds()
454 m_MapIdToFeature[featId] = pFeature; in xCreateParentCds()
455 return xAddFeatureToAnnot(pFeature, annot); in xCreateParentCds()
471 if (!xFeatureSetDataMrna(gff, *pFeature)) { in xCreateParentMrna()
482 m_MapIdToFeature[featId] = pFeature; in xCreateParentMrna()
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/dports/math/saga/saga-8.1.3/saga-gis/src/tools/shapes/shapes_points/
H A Dsnap_points_to_features.cpp222 double d = SG_Get_Distance(Point, pFeature->Get_Point(0)); in Snap_To_Point()
227 snap_Point = pFeature->Get_Point(0); in Snap_To_Point()
239 CSG_Rect r(pFeature->Get_Extent()); in Snap_To_Line()
245 for(int iPart=0; iPart<pFeature->Get_Part_Count(); iPart++) in Snap_To_Line()
247 TSG_Point C, B, A = pFeature->Get_Point(0, iPart); in Snap_To_Line()
249 for(int iPoint=1; iPoint<pFeature->Get_Point_Count(iPart); iPoint++) in Snap_To_Line()
252 A = pFeature->Get_Point(iPoint, iPart); in Snap_To_Line()
280 CSG_Rect r(pFeature->Get_Extent()); in Snap_To_Polygon()
286 for(int iPart=0; iPart<pFeature->Get_Part_Count(); iPart++) in Snap_To_Polygon()
288 TSG_Point C, B, A = pFeature->Get_Point(0, iPart, false); in Snap_To_Polygon()
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/dports/games/kodi-addon-game.libretro/game.libretro-2.2.0-Matrix/src/input/
H A DLibretroDevice.cpp77 const TiXmlElement* pFeature = pElement->FirstChildElement(BUTTONMAP_XML_ELM_FEATURE); in Deserialize() local
78 if (!pFeature) in Deserialize()
84 while (pFeature) in Deserialize()
86 const char* name = pFeature->Attribute(BUTTONMAP_XML_ATTR_FEATURE_NAME); in Deserialize()
93 const char* mapto = pFeature->Attribute(BUTTONMAP_XML_ATTR_FEATURE_MAPTO); in Deserialize()
100 const char* axis = pFeature->Attribute(BUTTONMAP_XML_ATTR_FEATURE_AXIS); in Deserialize()
125 pFeature = pFeature->NextSiblingElement(BUTTONMAP_XML_ELM_FEATURE); in Deserialize()
/dports/math/saga/saga-8.1.3/saga-gis/src/tools/io/io_gdal/
H A Dogr_driver.cpp665 OGRFeatureH pFeature; in Get_Type() local
669 if( OGR_F_GetGeometryRef(pFeature) ) in Get_Type()
671 Type = OGR_G_GetGeometryType(OGR_F_GetGeometryRef(pFeature)); in Get_Type()
674 OGR_F_Destroy(pFeature); in Get_Type()
776 OGRFeatureH pFeature; in Read() local
780 OGRGeometryH pGeometry = OGR_F_GetGeometryRef(pFeature); in Read()
805 OGR_F_Destroy(pFeature); in Read()
1006 OGR_F_SetFieldString (pFeature, iField, s.Get_Data()); in Write()
1023 OGR_L_CreateFeature(pLayer, pFeature); in Write()
1026 OGR_F_Destroy(pFeature); in Write()
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/dports/audio/mixxx/mixxx-2.3.0/src/library/
H A Dtreeitem.cpp29 LibraryFeature* pFeature, in TreeItem() argument
32 : m_pFeature(pFeature), in TreeItem()
71 void TreeItem::initFeatureRecursively(LibraryFeature* pFeature) { in initFeatureRecursively() argument
73 m_pFeature == pFeature); in initFeatureRecursively()
75 m_pParent->m_pFeature == pFeature); in initFeatureRecursively()
76 if (m_pFeature == pFeature) { in initFeatureRecursively()
79 m_pFeature = pFeature; in initFeatureRecursively()
81 pChild->initFeatureRecursively(pFeature); in initFeatureRecursively()
H A Dtreeitem.h19 LibraryFeature* pFeature) { in newRoot() argument
20 DEBUG_ASSERT(pFeature); in newRoot()
21 return std::make_unique<TreeItem>(pFeature, PrivateRootTag{}); in newRoot()
33 LibraryFeature* pFeature, in TreeItem() argument
35 : TreeItem(pFeature) { in TreeItem()
134 LibraryFeature* pFeature,
139 void initFeatureRecursively(LibraryFeature* pFeature);
/dports/math/saga/saga-8.1.3/saga-gis/src/tools/grid/grid_filter/
H A Dwombling.cpp183 if( !pFeature->Get_Gradient(x, y, Slope, Aspect) ) in Get_Gradient()
188 else if( pFeature->is_NoData(x , y ) in Get_Gradient()
189 || pFeature->is_NoData(x + 1, y ) in Get_Gradient()
190 || pFeature->is_NoData(x , y + 1) in Get_Gradient()
191 || pFeature->is_NoData(x + 1, y + 1) ) in Get_Gradient()
197 z[0] = pFeature->asDouble(x , y ); in Get_Gradient()
198 z[1] = pFeature->asDouble(x + 1, y ); in Get_Gradient()
199 z[2] = pFeature->asDouble(x , y + 1); in Get_Gradient()
200 z[3] = pFeature->asDouble(x + 1, y + 1); in Get_Gradient()
475 CSG_Grid *pFeature = Parameters("FEATURE")->asGrid(); in On_Execute() local
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seq/unit_test/
H A Dunit_test_so_map.cpp163 CRef<CSeq_feat> pFeature(new CSeq_feat); in BOOST_AUTO_TEST_CASE() local
164 pFeature->SetLocation(*pLocation); in BOOST_AUTO_TEST_CASE()
168 bool success = CSoMap::SoTypeToFeature(term, *pFeature, true); in BOOST_AUTO_TEST_CASE()
174 ostr << MSerial_Format_AsnText() << *pFeature << "\n"; in BOOST_AUTO_TEST_CASE()
175 vec_generated_seqfeats.push_back(pFeature); in BOOST_AUTO_TEST_CASE()
197 for (auto pFeature: vec_generated_seqfeats) { in BOOST_AUTO_TEST_CASE() local
198 const CSeq_feat& feature = *pFeature; in BOOST_AUTO_TEST_CASE()
/dports/math/saga/saga-8.1.3/saga-gis/src/tools/table/table_calculus/
H A Dtable_mRMR.cpp157 CSG_Table_Record *pFeature = pSelection->Add_Record(); in On_Execute() local
159 pFeature->Set_Value(0, i + 1); in On_Execute()
160 pFeature->Set_Value(1, mRMR.Get_Index(i)); in On_Execute()
161 pFeature->Set_Value(2, mRMR.Get_Name (i)); in On_Execute()
162 pFeature->Set_Value(3, mRMR.Get_Score(i)); in On_Execute()
/dports/multimedia/kodi-addon-peripheral.joystick/peripheral.joystick-1.7.1-Matrix/src/storage/xml/
H A DButtonMapXml.cpp370 if (!pFeature) in Deserialize()
376 for ( ; pFeature != nullptr; pFeature = pFeature->NextSiblingElement(BUTTONMAP_XML_ELEM_FEATURE)) in Deserialize()
378 const char* name = pFeature->Attribute(BUTTONMAP_XML_ATTR_FEATURE_NAME); in Deserialize()
412 if (DeserializePrimitive(pFeature, primitive)) in Deserialize()
418 pUp = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_UP); in Deserialize()
419 pDown = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_DOWN); in Deserialize()
420 pRight = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_RIGHT); in Deserialize()
421 pLeft = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_LEFT); in Deserialize()
429 pPositiveX = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_POSITIVE_X); in Deserialize()
430 pPositiveY = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_POSITIVE_Y); in Deserialize()
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/dports/astro/opencpn/OpenCPN-5.2.4/src/
H A Ds57mgr.cpp176 bool s57mgr::GetChartFirstM_COVR(char *pFullPath, OGRDataSource **pDS, OGRFeature **pFeature, in GetChartFirstM_COVR() argument
186 *pFeature = NULL; in GetChartFirstM_COVR()
194 *pFeature = objectDef; // Give to caller in GetChartFirstM_COVR()
225 OGRFeature **pFeature, int &catcov) in GetChartNextM_COVR() argument
238 *pFeature = objectDef; // Give to caller in GetChartNextM_COVR()
/dports/graphics/py-gdal/gdal-3.3.3/apps/
H A Dogrlineref.cpp442 if( nullptr != pFeature ) in CreateSubline()
448 OGRFeature::DestroyFeature(pFeature); in CreateSubline()
459 pFeature = poPkLayer->GetNextFeature(); in CreateSubline()
460 if( nullptr != pFeature ) in CreateSubline()
464 OGRFeature::DestroyFeature(pFeature); in CreateSubline()
491 moParts[dfStart] = pFeature; in CreateSubline()
1132 OGRFeature* pFeature = nullptr; in CreatePartsMultiple() local
1138 OGRFeature::DestroyFeature(pFeature); in CreatePartsMultiple()
1188 OGRFeature* pFeature = nullptr; in GetPosition() local
1205 OGRFeature::DestroyFeature(pFeature); in GetPosition()
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/dports/graphics/p5-Geo-GDAL/gdal-3.3.3/apps/
H A Dogrlineref.cpp442 if( nullptr != pFeature ) in CreateSubline()
448 OGRFeature::DestroyFeature(pFeature); in CreateSubline()
459 pFeature = poPkLayer->GetNextFeature(); in CreateSubline()
460 if( nullptr != pFeature ) in CreateSubline()
464 OGRFeature::DestroyFeature(pFeature); in CreateSubline()
491 moParts[dfStart] = pFeature; in CreateSubline()
1132 OGRFeature* pFeature = nullptr; in CreatePartsMultiple() local
1138 OGRFeature::DestroyFeature(pFeature); in CreatePartsMultiple()
1188 OGRFeature* pFeature = nullptr; in GetPosition() local
1205 OGRFeature::DestroyFeature(pFeature); in GetPosition()
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/dports/graphics/gdal/gdal-3.3.3/apps/
H A Dogrlineref.cpp442 if( nullptr != pFeature ) in CreateSubline()
448 OGRFeature::DestroyFeature(pFeature); in CreateSubline()
459 pFeature = poPkLayer->GetNextFeature(); in CreateSubline()
460 if( nullptr != pFeature ) in CreateSubline()
464 OGRFeature::DestroyFeature(pFeature); in CreateSubline()
491 moParts[dfStart] = pFeature; in CreateSubline()
1132 OGRFeature* pFeature = nullptr; in CreatePartsMultiple() local
1138 OGRFeature::DestroyFeature(pFeature); in CreatePartsMultiple()
1188 OGRFeature* pFeature = nullptr; in GetPosition() local
1205 OGRFeature::DestroyFeature(pFeature); in GetPosition()
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/dports/multimedia/intel-media-sdk/MediaSDK-intel-mediasdk-22.1.0/_studio/mfx_lib/encode_hw/hevc/agnostic/base/
H A Dhevcehw_base_impl.h148 , [id](TRFeature pFeature) { return pFeature->GetID() == id; }); in FindFeature()
159 T* pFeature = FindFeature<T>(id); in GetFeature() local
160 ThrowAssert(!pFeature, "Feature not found"); in GetFeature()
161 return *pFeature; in GetFeature()

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