/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/import/ftable/ |
H A D | gff3_annot_assembler.cpp | 81 auto pFeature = record.GetData(); in ProcessRecord() local 83 switch (pFeature->GetData().GetSubtype()) { in ProcessRecord() 105 CRef<CSeq_feat> pFeature, in xProcessFeatureDefault() argument 110 pFeature->GetData().GetSubtype()); in xProcessFeatureDefault() 115 mFeatureMap.AddFeature(recordId, pFeature); in xProcessFeatureDefault() 125 CRef<CSeq_feat> pFeature, in xProcessFeatureCds() argument 177 CRef<CSeq_feat> pFeature, in xProcessFeatureRna() argument 190 xMarkLocationPending(*pFeature); in xProcessFeatureRna() 210 CRef<CSeq_feat> pFeature, in xProcessFeatureExon() argument 268 for (auto& pFeature: ftable) { in FinalizeAnnot() local [all …]
|
H A D | gtf_annot_assembler.cpp | 423 CRef<CSeq_feat>& pFeature, in xAnnotAddFeature() argument 445 CRef<CSeq_feat>& pFeature) in xFeatureSetGene() argument 459 CRef<CSeq_feat>& pFeature) in xFeatureSetMrna() argument 469 CRef<CSeq_feat>& pFeature) in xFeatureSetCds() argument 472 pFeature->SetData().SetCdregion(); in xFeatureSetCds() 482 CRef<CSeq_feat>& pFeature) in xFeatureSetFeatId() argument 505 CRef<CSeq_feat>& pFeature) in xFeatureSetLocation() argument 509 pFeature->SetLocation().SetNull() : in xFeatureSetLocation() 517 CRef<CSeq_feat>& pFeature) in xFeatureUpdateLocation() argument 529 CRef<CSeq_feat>& pFeature) in xFeatureSetQualifiers() argument [all …]
|
H A D | gff3_annot_assembler.hpp | 63 CRef<CSeq_feat> pFeature) in AddFeature() argument 69 mMap[id] = pFeature; in AddFeature() 100 CRef<CSeq_feat> pFeature) in AddFeature() argument 107 auto itFeature = find(feats.begin(), feats.end(), pFeature); in AddFeature() 109 feats.push_back(pFeature); in AddFeature()
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
H A D | gff2_data.cpp | 510 CRef<CSeq_feat> pFeature, in InitializeFeature() argument 523 CRef<CSeq_feat> pFeature, in UpdateFeature() argument 548 CRef<CSeq_feat> pFeature, in xUpdateFeatureData() argument 591 CRef<CSeq_feat> pFeature ) const in xMigrateAttributes() 677 pFeature->SetExcept(true); in xMigrateAttributes() 815 pFeature->SetPseudo(true); in xMigrateAttributes() 917 CRef<CSeq_feat> pFeature, in xMigrateAttributeSingle() argument 939 CRef<CSeq_feat> pFeature, in xMigrateAttributeDefault() argument 968 CRef<CSeq_feat> pFeature, in xMigrateAttributesOrgName() argument 1035 CRef<CSeq_feat> pFeature, in xMigrateAttributesGo() argument [all …]
|
H A D | gff3_reader.cpp | 454 CRef<CSeq_feat> pFeature, in xUpdateAnnotExon() argument 532 CRef<CSeq_feat> pFeature, in xUpdateAnnotCds() argument 550 m_MapIdToFeature[cdsId] = pFeature; in xUpdateAnnotCds() 570 CRef<CSeq_feat> pFeature) in xFeatureSetXrefGrandParent() argument 667 CRef<CSeq_feat> pFeature, in xUpdateAnnotGeneric() argument 723 if (pFeature->GetData().IsRna() || in xUpdateAnnotGeneric() 735 CRef<CSeq_feat> pFeature, in xUpdateAnnotMrna() argument 796 CRef<CSeq_feat> pFeature, in xUpdateAnnotGene() argument 829 CRef<CSeq_feat> pFeature, in xUpdateAnnotRegion() argument 851 CRef< CSeq_feat > pFeature, in xAddFeatureToAnnot() [all …]
|
H A D | gff_base_columns.cpp | 134 CRef<CSeq_feat> pFeature, in InitializeFeature() argument 138 if (!xInitFeatureLocation(flags, pFeature, seqidresolve)) { in InitializeFeature() 141 if (!xInitFeatureData(flags, pFeature)) { in InitializeFeature() 144 return xInitFeatureId(flags, pFeature); in InitializeFeature() 150 CRef<CSeq_feat> pFeature ) const in xInitFeatureId() 156 pFeature->SetId(*pFeatId); in xInitFeatureId() 163 CRef<CSeq_feat> pFeature, in xInitFeatureLocation() argument 167 pFeature->SetLocation(*GetSeqLoc(flags, seqidresolve)); in xInitFeatureLocation() 174 CRef<CSeq_feat> pFeature ) const in xInitFeatureData() 177 CSeqFeatData::ESubtype subtype = pFeature->GetData().GetSubtype(); in xInitFeatureData() [all …]
|
H A D | gtf_reader.cpp | 325 CRef<CSeq_feat> pFeature( new CSeq_feat ); in xCreateParentGene() local 327 if (!xFeatureSetDataGene(gff, *pFeature)) { in xCreateParentGene() 340 m_MapIdToFeature[featId] = pFeature; in xCreateParentGene() 341 xAddFeatureToAnnot(pFeature, annot); in xCreateParentGene() 443 CRef<CSeq_feat> pFeature(new CSeq_feat); in xCreateParentCds() local 445 if (!xFeatureSetDataCds(gff, *pFeature)) { in xCreateParentCds() 454 m_MapIdToFeature[featId] = pFeature; in xCreateParentCds() 455 return xAddFeatureToAnnot(pFeature, annot); in xCreateParentCds() 471 if (!xFeatureSetDataMrna(gff, *pFeature)) { in xCreateParentMrna() 482 m_MapIdToFeature[featId] = pFeature; in xCreateParentMrna() [all …]
|
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
H A D | gff2_data.cpp | 510 CRef<CSeq_feat> pFeature, in InitializeFeature() argument 523 CRef<CSeq_feat> pFeature, in UpdateFeature() argument 548 CRef<CSeq_feat> pFeature, in xUpdateFeatureData() argument 591 CRef<CSeq_feat> pFeature ) const in xMigrateAttributes() 677 pFeature->SetExcept(true); in xMigrateAttributes() 815 pFeature->SetPseudo(true); in xMigrateAttributes() 917 CRef<CSeq_feat> pFeature, in xMigrateAttributeSingle() argument 939 CRef<CSeq_feat> pFeature, in xMigrateAttributeDefault() argument 968 CRef<CSeq_feat> pFeature, in xMigrateAttributesOrgName() argument 1035 CRef<CSeq_feat> pFeature, in xMigrateAttributesGo() argument [all …]
|
H A D | gff3_reader.cpp | 454 CRef<CSeq_feat> pFeature, in xUpdateAnnotExon() argument 532 CRef<CSeq_feat> pFeature, in xUpdateAnnotCds() argument 550 m_MapIdToFeature[cdsId] = pFeature; in xUpdateAnnotCds() 570 CRef<CSeq_feat> pFeature) in xFeatureSetXrefGrandParent() argument 667 CRef<CSeq_feat> pFeature, in xUpdateAnnotGeneric() argument 723 if (pFeature->GetData().IsRna() || in xUpdateAnnotGeneric() 735 CRef<CSeq_feat> pFeature, in xUpdateAnnotMrna() argument 796 CRef<CSeq_feat> pFeature, in xUpdateAnnotGene() argument 829 CRef<CSeq_feat> pFeature, in xUpdateAnnotRegion() argument 851 CRef< CSeq_feat > pFeature, in xAddFeatureToAnnot() [all …]
|
H A D | gff_base_columns.cpp | 134 CRef<CSeq_feat> pFeature, in InitializeFeature() argument 138 if (!xInitFeatureLocation(flags, pFeature, seqidresolve)) { in InitializeFeature() 141 if (!xInitFeatureData(flags, pFeature)) { in InitializeFeature() 144 return xInitFeatureId(flags, pFeature); in InitializeFeature() 150 CRef<CSeq_feat> pFeature ) const in xInitFeatureId() 156 pFeature->SetId(*pFeatId); in xInitFeatureId() 163 CRef<CSeq_feat> pFeature, in xInitFeatureLocation() argument 167 pFeature->SetLocation(*GetSeqLoc(flags, seqidresolve)); in xInitFeatureLocation() 174 CRef<CSeq_feat> pFeature ) const in xInitFeatureData() 177 CSeqFeatData::ESubtype subtype = pFeature->GetData().GetSubtype(); in xInitFeatureData() [all …]
|
H A D | gtf_reader.cpp | 325 CRef<CSeq_feat> pFeature( new CSeq_feat ); in xCreateParentGene() local 327 if (!xFeatureSetDataGene(gff, *pFeature)) { in xCreateParentGene() 340 m_MapIdToFeature[featId] = pFeature; in xCreateParentGene() 341 xAddFeatureToAnnot(pFeature, annot); in xCreateParentGene() 443 CRef<CSeq_feat> pFeature(new CSeq_feat); in xCreateParentCds() local 445 if (!xFeatureSetDataCds(gff, *pFeature)) { in xCreateParentCds() 454 m_MapIdToFeature[featId] = pFeature; in xCreateParentCds() 455 return xAddFeatureToAnnot(pFeature, annot); in xCreateParentCds() 471 if (!xFeatureSetDataMrna(gff, *pFeature)) { in xCreateParentMrna() 482 m_MapIdToFeature[featId] = pFeature; in xCreateParentMrna() [all …]
|
/dports/math/saga/saga-8.1.3/saga-gis/src/tools/shapes/shapes_points/ |
H A D | snap_points_to_features.cpp | 222 double d = SG_Get_Distance(Point, pFeature->Get_Point(0)); in Snap_To_Point() 227 snap_Point = pFeature->Get_Point(0); in Snap_To_Point() 239 CSG_Rect r(pFeature->Get_Extent()); in Snap_To_Line() 245 for(int iPart=0; iPart<pFeature->Get_Part_Count(); iPart++) in Snap_To_Line() 247 TSG_Point C, B, A = pFeature->Get_Point(0, iPart); in Snap_To_Line() 249 for(int iPoint=1; iPoint<pFeature->Get_Point_Count(iPart); iPoint++) in Snap_To_Line() 252 A = pFeature->Get_Point(iPoint, iPart); in Snap_To_Line() 280 CSG_Rect r(pFeature->Get_Extent()); in Snap_To_Polygon() 286 for(int iPart=0; iPart<pFeature->Get_Part_Count(); iPart++) in Snap_To_Polygon() 288 TSG_Point C, B, A = pFeature->Get_Point(0, iPart, false); in Snap_To_Polygon() [all …]
|
/dports/games/kodi-addon-game.libretro/game.libretro-2.2.0-Matrix/src/input/ |
H A D | LibretroDevice.cpp | 77 const TiXmlElement* pFeature = pElement->FirstChildElement(BUTTONMAP_XML_ELM_FEATURE); in Deserialize() local 78 if (!pFeature) in Deserialize() 84 while (pFeature) in Deserialize() 86 const char* name = pFeature->Attribute(BUTTONMAP_XML_ATTR_FEATURE_NAME); in Deserialize() 93 const char* mapto = pFeature->Attribute(BUTTONMAP_XML_ATTR_FEATURE_MAPTO); in Deserialize() 100 const char* axis = pFeature->Attribute(BUTTONMAP_XML_ATTR_FEATURE_AXIS); in Deserialize() 125 pFeature = pFeature->NextSiblingElement(BUTTONMAP_XML_ELM_FEATURE); in Deserialize()
|
/dports/math/saga/saga-8.1.3/saga-gis/src/tools/io/io_gdal/ |
H A D | ogr_driver.cpp | 665 OGRFeatureH pFeature; in Get_Type() local 669 if( OGR_F_GetGeometryRef(pFeature) ) in Get_Type() 671 Type = OGR_G_GetGeometryType(OGR_F_GetGeometryRef(pFeature)); in Get_Type() 674 OGR_F_Destroy(pFeature); in Get_Type() 776 OGRFeatureH pFeature; in Read() local 780 OGRGeometryH pGeometry = OGR_F_GetGeometryRef(pFeature); in Read() 805 OGR_F_Destroy(pFeature); in Read() 1006 OGR_F_SetFieldString (pFeature, iField, s.Get_Data()); in Write() 1023 OGR_L_CreateFeature(pLayer, pFeature); in Write() 1026 OGR_F_Destroy(pFeature); in Write() [all …]
|
/dports/audio/mixxx/mixxx-2.3.0/src/library/ |
H A D | treeitem.cpp | 29 LibraryFeature* pFeature, in TreeItem() argument 32 : m_pFeature(pFeature), in TreeItem() 71 void TreeItem::initFeatureRecursively(LibraryFeature* pFeature) { in initFeatureRecursively() argument 73 m_pFeature == pFeature); in initFeatureRecursively() 75 m_pParent->m_pFeature == pFeature); in initFeatureRecursively() 76 if (m_pFeature == pFeature) { in initFeatureRecursively() 79 m_pFeature = pFeature; in initFeatureRecursively() 81 pChild->initFeatureRecursively(pFeature); in initFeatureRecursively()
|
H A D | treeitem.h | 19 LibraryFeature* pFeature) { in newRoot() argument 20 DEBUG_ASSERT(pFeature); in newRoot() 21 return std::make_unique<TreeItem>(pFeature, PrivateRootTag{}); in newRoot() 33 LibraryFeature* pFeature, in TreeItem() argument 35 : TreeItem(pFeature) { in TreeItem() 134 LibraryFeature* pFeature, 139 void initFeatureRecursively(LibraryFeature* pFeature);
|
/dports/math/saga/saga-8.1.3/saga-gis/src/tools/grid/grid_filter/ |
H A D | wombling.cpp | 183 if( !pFeature->Get_Gradient(x, y, Slope, Aspect) ) in Get_Gradient() 188 else if( pFeature->is_NoData(x , y ) in Get_Gradient() 189 || pFeature->is_NoData(x + 1, y ) in Get_Gradient() 190 || pFeature->is_NoData(x , y + 1) in Get_Gradient() 191 || pFeature->is_NoData(x + 1, y + 1) ) in Get_Gradient() 197 z[0] = pFeature->asDouble(x , y ); in Get_Gradient() 198 z[1] = pFeature->asDouble(x + 1, y ); in Get_Gradient() 199 z[2] = pFeature->asDouble(x , y + 1); in Get_Gradient() 200 z[3] = pFeature->asDouble(x + 1, y + 1); in Get_Gradient() 475 CSG_Grid *pFeature = Parameters("FEATURE")->asGrid(); in On_Execute() local [all …]
|
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seq/unit_test/ |
H A D | unit_test_so_map.cpp | 163 CRef<CSeq_feat> pFeature(new CSeq_feat); in BOOST_AUTO_TEST_CASE() local 164 pFeature->SetLocation(*pLocation); in BOOST_AUTO_TEST_CASE() 168 bool success = CSoMap::SoTypeToFeature(term, *pFeature, true); in BOOST_AUTO_TEST_CASE() 174 ostr << MSerial_Format_AsnText() << *pFeature << "\n"; in BOOST_AUTO_TEST_CASE() 175 vec_generated_seqfeats.push_back(pFeature); in BOOST_AUTO_TEST_CASE() 197 for (auto pFeature: vec_generated_seqfeats) { in BOOST_AUTO_TEST_CASE() local 198 const CSeq_feat& feature = *pFeature; in BOOST_AUTO_TEST_CASE()
|
/dports/math/saga/saga-8.1.3/saga-gis/src/tools/table/table_calculus/ |
H A D | table_mRMR.cpp | 157 CSG_Table_Record *pFeature = pSelection->Add_Record(); in On_Execute() local 159 pFeature->Set_Value(0, i + 1); in On_Execute() 160 pFeature->Set_Value(1, mRMR.Get_Index(i)); in On_Execute() 161 pFeature->Set_Value(2, mRMR.Get_Name (i)); in On_Execute() 162 pFeature->Set_Value(3, mRMR.Get_Score(i)); in On_Execute()
|
/dports/multimedia/kodi-addon-peripheral.joystick/peripheral.joystick-1.7.1-Matrix/src/storage/xml/ |
H A D | ButtonMapXml.cpp | 370 if (!pFeature) in Deserialize() 376 for ( ; pFeature != nullptr; pFeature = pFeature->NextSiblingElement(BUTTONMAP_XML_ELEM_FEATURE)) in Deserialize() 378 const char* name = pFeature->Attribute(BUTTONMAP_XML_ATTR_FEATURE_NAME); in Deserialize() 412 if (DeserializePrimitive(pFeature, primitive)) in Deserialize() 418 pUp = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_UP); in Deserialize() 419 pDown = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_DOWN); in Deserialize() 420 pRight = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_RIGHT); in Deserialize() 421 pLeft = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_LEFT); in Deserialize() 429 pPositiveX = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_POSITIVE_X); in Deserialize() 430 pPositiveY = pFeature->FirstChildElement(BUTTONMAP_XML_ELEM_POSITIVE_Y); in Deserialize() [all …]
|
/dports/astro/opencpn/OpenCPN-5.2.4/src/ |
H A D | s57mgr.cpp | 176 bool s57mgr::GetChartFirstM_COVR(char *pFullPath, OGRDataSource **pDS, OGRFeature **pFeature, in GetChartFirstM_COVR() argument 186 *pFeature = NULL; in GetChartFirstM_COVR() 194 *pFeature = objectDef; // Give to caller in GetChartFirstM_COVR() 225 OGRFeature **pFeature, int &catcov) in GetChartNextM_COVR() argument 238 *pFeature = objectDef; // Give to caller in GetChartNextM_COVR()
|
/dports/graphics/py-gdal/gdal-3.3.3/apps/ |
H A D | ogrlineref.cpp | 442 if( nullptr != pFeature ) in CreateSubline() 448 OGRFeature::DestroyFeature(pFeature); in CreateSubline() 459 pFeature = poPkLayer->GetNextFeature(); in CreateSubline() 460 if( nullptr != pFeature ) in CreateSubline() 464 OGRFeature::DestroyFeature(pFeature); in CreateSubline() 491 moParts[dfStart] = pFeature; in CreateSubline() 1132 OGRFeature* pFeature = nullptr; in CreatePartsMultiple() local 1138 OGRFeature::DestroyFeature(pFeature); in CreatePartsMultiple() 1188 OGRFeature* pFeature = nullptr; in GetPosition() local 1205 OGRFeature::DestroyFeature(pFeature); in GetPosition() [all …]
|
/dports/graphics/p5-Geo-GDAL/gdal-3.3.3/apps/ |
H A D | ogrlineref.cpp | 442 if( nullptr != pFeature ) in CreateSubline() 448 OGRFeature::DestroyFeature(pFeature); in CreateSubline() 459 pFeature = poPkLayer->GetNextFeature(); in CreateSubline() 460 if( nullptr != pFeature ) in CreateSubline() 464 OGRFeature::DestroyFeature(pFeature); in CreateSubline() 491 moParts[dfStart] = pFeature; in CreateSubline() 1132 OGRFeature* pFeature = nullptr; in CreatePartsMultiple() local 1138 OGRFeature::DestroyFeature(pFeature); in CreatePartsMultiple() 1188 OGRFeature* pFeature = nullptr; in GetPosition() local 1205 OGRFeature::DestroyFeature(pFeature); in GetPosition() [all …]
|
/dports/graphics/gdal/gdal-3.3.3/apps/ |
H A D | ogrlineref.cpp | 442 if( nullptr != pFeature ) in CreateSubline() 448 OGRFeature::DestroyFeature(pFeature); in CreateSubline() 459 pFeature = poPkLayer->GetNextFeature(); in CreateSubline() 460 if( nullptr != pFeature ) in CreateSubline() 464 OGRFeature::DestroyFeature(pFeature); in CreateSubline() 491 moParts[dfStart] = pFeature; in CreateSubline() 1132 OGRFeature* pFeature = nullptr; in CreatePartsMultiple() local 1138 OGRFeature::DestroyFeature(pFeature); in CreatePartsMultiple() 1188 OGRFeature* pFeature = nullptr; in GetPosition() local 1205 OGRFeature::DestroyFeature(pFeature); in GetPosition() [all …]
|
/dports/multimedia/intel-media-sdk/MediaSDK-intel-mediasdk-22.1.0/_studio/mfx_lib/encode_hw/hevc/agnostic/base/ |
H A D | hevcehw_base_impl.h | 148 , [id](TRFeature pFeature) { return pFeature->GetID() == id; }); in FindFeature() 159 T* pFeature = FindFeature<T>(id); in GetFeature() local 160 ThrowAssert(!pFeature, "Feature not found"); in GetFeature() 161 return *pFeature; in GetFeature()
|