Searched refs:pI2I (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/clustal-omega/clustal-omega-1.2.4/src/hhalign/ |
| H A D | hhhmm-C.h | 1625 float pM2M, pM2I, pM2D, pI2I, pI2M, pD2D, pD2M; in AddTransitionPseudocounts() local
1636 pI2I=1.0*gape/(gape-1+1.0/0.75); in AddTransitionPseudocounts()
1637 pI2M=1-pI2I; in AddTransitionPseudocounts()
1666 p1 = Neff_I[i]*fpow2(tr[i][I2I]) + gapb*pI2I; in AddTransitionPseudocounts()
1703 printf("pI2M=%4.1f%%, pI2I=%4.1f%%, ",100*pI2M,100*pI2I); in AddTransitionPseudocounts()
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| /dports/biology/hhsuite/hh-suite-3.3.0/src/ |
| H A D | hhhmm.cpp | 1722 float pM2M, pM2I, pM2D, pI2I, pI2M, pD2D, pD2M; in AddTransitionPseudocounts() local
1744 pI2I = 1.0 * gape / (gape - 1 + 1.0 / 0.75); in AddTransitionPseudocounts()
1745 pI2M = 1 - pI2I; in AddTransitionPseudocounts()
1767 p1 = Neff_I[i] * fpow2(tr[i][I2I]) + gapb * pI2I; in AddTransitionPseudocounts()
1786 HH_LOG(DEBUG1) << "pI2M=" << 100*pI2M << "%, pI2I=" << 100*pI2I << "%, "; in AddTransitionPseudocounts()
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