Searched refs:p_bq (Results 1 – 2 of 2) sorted by relevance
246 int32_t* p_bq = NULL; in paste_and_compute_features_sequential() local414 if ( bcf_get_format_int32(odr->hdr, v, "BQ", &p_bq, &np_bq) < 0 ) { in paste_and_compute_features_sequential()489 if ( p_bq[l] > maxBQ ) p_bq[l] = maxBQ; in paste_and_compute_features_sequential()492 if ( p_bq[l] > 20 ) { in paste_and_compute_features_sequential()493 oth_exp_q20 += ( LogTool::pl2prob(p_bq[l]) * 2.0 / 3.0 ); in paste_and_compute_features_sequential()501 bq_s1 += p_bq[l]; in paste_and_compute_features_sequential()502 bq_s2 += (p_bq[l] * p_bq[l]); in paste_and_compute_features_sequential()510 bq_al += p_bq[l]; in paste_and_compute_features_sequential()526 if ( p_bq[l] > 20 ) { in paste_and_compute_features_sequential()527 oth_exp_q20 += ( LogTool::pl2prob(p_bq[l]) * 2.0 / 3.0 ); in paste_and_compute_features_sequential()
251 int32_t* p_bq = NULL; in paste_genotypes() local434 if ( bcf_get_format_int32(odr->hdr, v, "BQ", &p_bq, &np_bq) < 0 ) { in paste_genotypes()509 if ( p_bq[l] > maxBQ ) p_bq[l] = maxBQ; in paste_genotypes()512 if ( p_bq[l] > 20 ) { in paste_genotypes()513 oth_exp_q20 += ( LogTool::pl2prob(p_bq[l]) * 2.0 / 3.0 ); in paste_genotypes()521 bq_s1 += p_bq[l]; in paste_genotypes()522 bq_s2 += (p_bq[l] * p_bq[l]); in paste_genotypes()530 bq_al += p_bq[l]; in paste_genotypes()546 if ( p_bq[l] > 20 ) { in paste_genotypes()547 oth_exp_q20 += ( LogTool::pl2prob(p_bq[l]) * 2.0 / 3.0 ); in paste_genotypes()