Searched refs:p_lk_tip_r (Results 1 – 13 of 13) sorted by relevance
/dports/biology/phyml/phyml-3.3.20200621/src/ |
H A D | ancestral.c | 184 else for(i=0;i<ns;++i) probs[i] = b->p_lk_tip_r[site*ns+i]; in Sample_Ancestral_Seq_Pre() 245 else if(d == b->rght) for(i=0;i<ns;++i) probs[i] = b->p_lk_tip_r[site*ns+i]; in Sample_Ancestral_Seq_Core() 292 r += tree->e_root->p_lk_tip_r[site*dim2+j] * Pij[r_cat*dim3+i*dim2+j]; in Sample_Ancestral_Seq_Core() 718 p0 += v0->b[0]->p_lk_tip_r[csite*ns+j] * Pij0[catg*nsns+i*ns+j]; in Ancestral_Sequences_One_Node() 724 v0->b[0]->p_lk_tip_r[csite*ns+j], in Ancestral_Sequences_One_Node() 755 p1 += v1->b[0]->p_lk_tip_r[csite*ns+j] * Pij1[catg*nsns+i*ns+j]; in Ancestral_Sequences_One_Node() 761 v1->b[0]->p_lk_tip_r[csite*ns+j], in Ancestral_Sequences_One_Node() 791 p2 += v2->b[0]->p_lk_tip_r[csite*ns+j] * Pij2[catg*nsns+i*ns+j]; in Ancestral_Sequences_One_Node()
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H A D | make.c | 80 tree->n_root->b[1]->p_lk_tip_r = tree->e_root->p_lk_tip_l; in Make_Tree_For_Lk() 81 tree->n_root->b[2]->p_lk_tip_r = tree->e_root->p_lk_tip_r; in Make_Tree_For_Lk() 361 b->p_lk_tip_r = NULL; in Make_Edge_Lk_Rght() 367 …if(posix_memalign((void **)&b->p_lk_tip_r,BYTE_ALIGN,(size_t)tree->data->crunch_len*tree->mod->ns*… in Make_Edge_Lk_Rght() 369 … b->p_lk_tip_r = _aligned_malloc(tree->data->crunch_len*tree->mod->ns*sizeof(phydbl),BYTE_ALIGN); in Make_Edge_Lk_Rght() 372 b->p_lk_tip_r = (phydbl *)mCalloc(tree->data->crunch_len*tree->mod->ns,sizeof(phydbl)); in Make_Edge_Lk_Rght() 380 b->p_lk_tip_r = NULL; in Make_Edge_Lk_Rght()
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H A D | lk.c | 609 p_lk_rght = b->rght->tax ? b->p_lk_tip_r : b->p_lk_rght; in Lk() 1070 if(b->rght->tax == YES) p_lk_rght = b->p_lk_tip_r; in Update_Eigen_Lr() 1460 … p1_lk1 += Pij1[catg*nsns+i*ns+j] * (phydbl)n_v1->b[0]->p_lk_tip_r[site*ns+j]; in Update_Partial_Lk_Generic() 1497 … p2_lk2 += Pij2[catg*nsns+i*ns+j] * (phydbl)n_v2->b[0]->p_lk_tip_r[site*ns+j]; in Update_Partial_Lk_Generic() 2082 tree->a_nodes[i]->b[0]->p_lk_tip_r); in Init_Partial_Lk_Tips_Double() 2086 tree->a_nodes[i]->b[0]->p_lk_tip_r); in Init_Partial_Lk_Tips_Double() 2093 tree->a_nodes[i]->b[0]->p_lk_tip_r); in Init_Partial_Lk_Tips_Double() 2129 tree->a_nodes[i]->b[0]->p_lk_tip_r); in Init_Partial_Lk_Tips_Int() 2137 tree->a_nodes[i]->b[0]->p_lk_tip_r); in Init_Partial_Lk_Tips_Int() 2148 tree->a_nodes[i]->b[0]->p_lk_tip_r); in Init_Partial_Lk_Tips_Int() [all …]
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H A D | utilities.c | 1382 n_e->b[j]->p_lk_tip_r = n_f->b[j]->p_lk_tip_r; in Share_Lk_Struct() 1409 n_e->b[0]->p_lk_tip_r = n_f->b[0]->p_lk_tip_r; in Share_Lk_Struct() 5187 b1->p_lk_tip_r = b2->p_lk_tip_r; in Prune_Subtree() 5505 residual->p_lk_tip_r = target->p_lk_tip_r; in Graft_Subtree() 5686 tree->n_root->b[2]->p_lk_tip_r = tree->e_root->p_lk_tip_r; in Graft_Subtree() 6734 buff_p_lk_tip = b->p_lk_tip_r; in Swap_Partial_Lk() 6735 b->p_lk_tip_r = a->p_lk_tip_l; in Swap_Partial_Lk() 6784 b->p_lk_tip_l = a->p_lk_tip_r; in Swap_Partial_Lk() 6785 a->p_lk_tip_r = buff_p_lk_tip; in Swap_Partial_Lk() 6833 b->p_lk_tip_r = a->p_lk_tip_r; in Swap_Partial_Lk() [all …]
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H A D | beagle_utils.c | 151 …double* tip = short_to_double(tree->a_nodes[i]->b[0]->p_lk_tip_r, tree->n_pattern*tree->mod->ns); … in create_beagle_instance()
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H A D | m4.c | 583 tree->a_nodes[i]->b[0]->p_lk_tip_r[curr_site*dim2 + j*dim3+k] = in M4_Init_Partial_Lk_Tips_Int() 584 tree->a_nodes[i]->b[0]->p_lk_tip_r[curr_site*dim2 + 0*dim3+k]; in M4_Init_Partial_Lk_Tips_Int() 699 b->p_lk_tip_r[tree->curr_site*dim2 + l] * in M4_Post_Prob_H_Class_Edge_Site()
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H A D | free.c | 517 if(b->p_lk_tip_r) Free(b->p_lk_tip_r); in Free_Edge_Lk_Rght()
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H A D | sse.c | 82 p_lk_rght = b->rght->tax ? b->p_lk_tip_r : b->p_lk_rght; in SSE_Update_Eigen_Lr()
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H A D | avx.c | 82 p_lk_rght = b->rght->tax ? b->p_lk_tip_r : b->p_lk_rght; in AVX_Update_Eigen_Lr()
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H A D | mixt.c | 916 b->p_lk_tip_r + site*ns, in MIXT_Lk() 2686 p0 += v0->b[0]->p_lk_tip_r[csite*Ns+j] * Pij0[catg*NsNs+i*Ns+j]; in MIXT_Ancestral_Sequences_One_Node() 2707 p1 += v1->b[0]->p_lk_tip_r[csite*Ns+j] * Pij1[catg*NsNs+i*Ns+j]; in MIXT_Ancestral_Sequences_One_Node() 2731 p2 += v2->b[0]->p_lk_tip_r[csite*Ns+j] * Pij2[catg*NsNs+i*Ns+j]; in MIXT_Ancestral_Sequences_One_Node()
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H A D | utilities.h | 638 phydbl *p_lk_tip_r, *p_lk_tip_l; member
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H A D | io.c | 3300 int tip_partial = d->b[0]->p_lk_tip_r[site*tree->mod->ns + i]; in Print_Tip_Partials() 3399 fprintf(stdout,"[%d,%d]%.1f ",site,j,b->p_lk_tip_r[site*tree->mod->ns + j]); in Print_Edge_Likelihoods()
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/dports/biology/seaview/seaview/csrc/ |
H A D | phyml_util.h | 203 short int **p_lk_tip_r,**p_lk_tip_l; member
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