| /dports/biology/ugene/ugene-40.1/src/libs_3rdparty/samtools/src/samtools/bcftools/ |
| H A D | prob1.h | 12 double f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var; member
|
| H A D | prob1.c | 451 static double mc_cal_afs(bcf_p1aux_t *ma, double *p_ref_folded, double *p_var_folded) in mc_cal_afs() argument
470 *p_var_folded = sum2 / sum; in mc_cal_afs()
498 rst->f_exp = mc_cal_afs(ma, &rst->p_ref_folded, &rst->p_var_folded); in bcf_p1_cal()
|
| H A D | call1.c | 176 fq = pr->p_ref_folded < 0.5? -4.343 * log(pr->p_ref_folded) : 4.343 * log(pr->p_var_folded); in update_bcf1()
|
| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | prob1.h | 56 double f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var; member
|
| H A D | prob1.c | 432 static double mc_cal_afs(bcf_p1aux_t *ma, double *p_ref_folded, double *p_var_folded) in mc_cal_afs() argument
452 *p_var_folded = sum2 / sum; in mc_cal_afs()
474 rst->f_exp = mc_cal_afs(ma, &rst->p_ref_folded, &rst->p_var_folded); in bcf_p1_cal()
|
| H A D | ccall.c | 201 fq = pr->p_ref_folded < 0.5? -4.343 * log(pr->p_ref_folded) : 4.343 * log(pr->p_var_folded); in update_bcf1()
|
| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | prob1.h | 56 double f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var; member
|
| H A D | prob1.c | 432 static double mc_cal_afs(bcf_p1aux_t *ma, double *p_ref_folded, double *p_var_folded) in mc_cal_afs() argument
452 *p_var_folded = sum2 / sum; in mc_cal_afs()
474 rst->f_exp = mc_cal_afs(ma, &rst->p_ref_folded, &rst->p_var_folded); in bcf_p1_cal()
|
| H A D | ccall.c | 201 fq = pr->p_ref_folded < 0.5? -4.343 * log(pr->p_ref_folded) : 4.343 * log(pr->p_var_folded); in update_bcf1()
|
| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | prob1.h | 56 double f_exp, f_flat, p_ref_folded, p_ref, p_var_folded, p_var; member
|
| H A D | prob1.c | 432 static double mc_cal_afs(bcf_p1aux_t *ma, double *p_ref_folded, double *p_var_folded) in mc_cal_afs() argument
452 *p_var_folded = sum2 / sum; in mc_cal_afs()
474 rst->f_exp = mc_cal_afs(ma, &rst->p_ref_folded, &rst->p_var_folded); in bcf_p1_cal()
|
| H A D | prob1.c.pysam.c | 434 static double mc_cal_afs(bcf_p1aux_t *ma, double *p_ref_folded, double *p_var_folded) in mc_cal_afs() argument
454 *p_var_folded = sum2 / sum; in mc_cal_afs()
476 rst->f_exp = mc_cal_afs(ma, &rst->p_ref_folded, &rst->p_var_folded); in bcf_p1_cal()
|
| H A D | ccall.c | 201 fq = pr->p_ref_folded < 0.5? -4.343 * log(pr->p_ref_folded) : 4.343 * log(pr->p_var_folded); in update_bcf1()
|
| H A D | ccall.c.pysam.c | 203 fq = pr->p_ref_folded < 0.5? -4.343 * log(pr->p_ref_folded) : 4.343 * log(pr->p_var_folded); in update_bcf1()
|