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Searched refs:pairLength (Results 1 – 25 of 42) sorted by relevance

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/dports/www/gohugo/hugo-0.91.2/vendor/github.com/niklasfasching/go-org/org/
H A Dinline.go205 func (d *Document) parseLatexFragment(input string, start int, pairLength int) (int, Node) {
209 if pairLength == 1 && input[start:start+2] == "$$" {
210 pairLength = 2
212 openingPair := input[start : start+pairLength]
214 if i := strings.Index(input[start+pairLength:], closingPair); i != -1 {
215 content := d.parseRawInline(input[start+pairLength : start+pairLength+i])
216 return i + pairLength + pairLength, LatexFragment{openingPair, closingPair, content}
/dports/www/gitea/gitea-1.16.5/vendor/github.com/niklasfasching/go-org/org/
H A Dinline.go211 func (d *Document) parseLatexFragment(input string, start int, pairLength int) (int, Node) {
215 if pairLength == 1 && input[start:start+2] == "$$" {
216 pairLength = 2
218 openingPair := input[start : start+pairLength]
220 if i := strings.Index(input[start+pairLength:], closingPair); i != -1 {
221 content := d.parseRawInline(input[start+pairLength : start+pairLength+i])
222 return i + pairLength + pairLength, LatexFragment{openingPair, closingPair, content}
/dports/biology/bbmap/bbmap/current/jgi/
H A DDedupeByMapping.java215 unmappedBases+=r1.pairLength(); in processInner_unsorted()
218 retainedBases+=r1.pairLength(); in processInner_unsorted()
223 retainedBases+=r1.pairLength(); in processInner_unsorted()
232 … float a=(r1.expectedErrors(true, 0)+(r2==null ? 0 : r2.expectedErrors(true, 0)))/r1.pairLength(); in processInner_unsorted()
240 duplicateBases+=r1.pairLength(); in processInner_unsorted()
342 unmappedBases+=r1.pairLength(); in processInner_sorted()
350 … float a=(r1.expectedErrors(true, 0)+(r2==null ? 0 : r2.expectedErrors(true, 0)))/r1.pairLength(); in processInner_sorted()
358 duplicateBases+=r1.pairLength(); in processInner_sorted()
H A DSplitNexteraLMP.java273 basesLmp+=r1.pairLength(); in processInner()
283 basesFrag+=r1.pairLength(); in processInner()
293 basesUnk+=r1.pairLength(); in processInner()
303 basesSingle+=r1.pairLength(); in processInner()
H A DGradeMergedReads.java133 if(insert>0 && insert<r1.pairLength()){ in process()
H A DSeal.java1225 int len=r1.pairLength();
1929 basesInT+=r1.pairLength();
2010 basesQFilteredT+=r1.pairLength();
2052 basesQFilteredT+=r1.pairLength();
2113 basesUnmatchedT+=r1.pairLength();
2269 basesMatchedT+=r1.pairLength();
2272 basesUnmatchedT+=r1.pairLength();
H A DBBDuk.java2677 int oldLen=r1.pairLength(); in run()
2679 int trimmed=oldLen-r1.pairLength(); in run()
2843 basesTrimmedBySwiftT+=r1.pairLength(); in run()
2870 basesPolyTrimmedT+=r1.pairLength(); in run()
2907 basesPolyTrimmedT+=r1.pairLength(); in run()
2944 basesPolyTrimmedT+=r1.pairLength(); in run()
2998 basesQTrimmedT+=r1.pairLength(); in run()
3044 basesQFilteredT+=r1.pairLength(); in run()
3057 basesEFilteredT+=r1.pairLength(); in run()
3087 basesOutmT+=r1.pairLength(); in run()
[all …]
H A DAdjustHomopolymers.java377 basesOut+=r1.pairLength(); in processList()
/dports/devel/hs-hasktags/hasktags-0.72.0/_cabal_deps/json-0.10/tests/
H A DParallel.hs134 . map pairLength
144 pairLength xss@(xs:_) = (length xss, xs) function
H A DQuickCheckUtils.hs108 . map pairLength
118 pairLength xss@(xs:_) = (length xss, xs) function
/dports/devel/elm-format/elm-format-0.8.3/_cabal_deps/json-0.10/tests/
H A DParallel.hs134 . map pairLength
144 pairLength xss@(xs:_) = (length xss, xs) function
H A DQuickCheckUtils.hs108 . map pairLength
118 pairLength xss@(xs:_) = (length xss, xs) function
/dports/biology/bbmap/bbmap/current/clump/
H A DStreamToOutput.java72 basesIn+=r.pairLength(); in processSingle()
105 basesIn+=r.pairLength(); in processMulti()
H A DPivotSet.java295 basesProcessedT+=r1.pairLength(); in run()
H A DKmerSort2.java379 basesOut+=r.pairLength(); in processInner()
/dports/biology/bbmap/bbmap/current/cardinality/
H A DLogLogWrapper.java311 basesProcessedT+=r.pairLength(); in runCris()
334 basesProcessedT+=r.pairLength(); in runSynth()
/dports/biology/bbmap/bbmap/current/template/
H A DA_Sample2.java117 basesProcessed+=r1.pairLength(); in process()
H A DA_SampleSummary.java103 basesProcessed+=r1.pairLength(); in process()
H A DA_Sample.java369 basesOut+=r1.pairLength(); in processList()
H A DA_Sample_Generator.java355 basesProcessed+=r.pairLength(); in loadData()
H A DA_SampleMT.java444 basesOutT+=r1.pairLength();
/dports/biology/bbmap/bbmap/current/jasper/
H A DKmerPosition.java121 basesProcessed+=r1.pairLength(); in process()
H A DKmerPosition3.java202 basesProcessed+=r1.pairLength(); in process()
/dports/biology/bbmap/bbmap/current/prok/
H A DSplitRibo.java465 basesOutT[type]+=r1.pairLength();
/dports/biology/bbmap/bbmap/current/sketch/
H A DKmerLimit.java438 basesOutT+=r1.pairLength();

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