Searched refs:pam_type (Results 1 – 3 of 3) sorted by relevance
/dports/biology/fasta/fasta/ |
H A D | ag_stats.c | 36 if (strcmp(pam_type,"BL50")==0) { in init_stats() 40 else if (strcmp(pam_type,"BL62")==0) { in init_stats() 44 else if (strcmp(pam_type,"BL80")==0) { in init_stats() 48 else if (strcmp(pam_type,"PAM250")==0) { in init_stats() 52 else if (strcmp(pam_type,"PAM120")==0) { in init_stats() 56 else if (strcmp(pam_type,"MD_10")==0) { in init_stats() 60 else if (strcmp(pam_type,"MD10")==0) { in init_stats() 64 else if (strcmp(pam_type,"MD_20")==0) { in init_stats() 68 else if (strcmp(pam_type,"MD20")==0) { in init_stats() 72 else if (strcmp(pam_type,"MD_40")==0) { in init_stats() [all …]
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H A D | lalign2.c | 36 extern int init_stats(char *pam_type, int *gdelval, int *ggapval, int del_set); 109 char pam_type[10]; variable
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/dports/biology/fasta3/fasta-36.3.8/src/ |
H A D | ag_stats.c | 17 ag_parm(char *pam_type, int gdelval, int ggapval) in ag_parm() argument 29 if (strcmp(pam_type,"BL50")==0 || strcmp(pam_type,"BLOSUM50")==0) in ag_parm() 31 else if (strcmp(pam_type,"BL62")==0 || strcmp(pam_type,"BLOSUM62")==0) in ag_parm() 33 else if (strcmp(pam_type,"P250")==0) in ag_parm() 35 else if (strcmp(pam_type,"P120")==0) in ag_parm() 37 else if (strcmp(pam_type,"MD10")==0) in ag_parm() 39 else if (strcmp(pam_type,"MD20")==0) in ag_parm() 41 else if (strcmp(pam_type,"MD40")==0) in ag_parm() 43 else if (strcmp(pam_type,"DNA")==0 || strcmp(pam_type,"+5/-4")==0) in ag_parm()
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