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Searched refs:pam_type (Results 1 – 3 of 3) sorted by relevance

/dports/biology/fasta/fasta/
H A Dag_stats.c36 if (strcmp(pam_type,"BL50")==0) { in init_stats()
40 else if (strcmp(pam_type,"BL62")==0) { in init_stats()
44 else if (strcmp(pam_type,"BL80")==0) { in init_stats()
48 else if (strcmp(pam_type,"PAM250")==0) { in init_stats()
52 else if (strcmp(pam_type,"PAM120")==0) { in init_stats()
56 else if (strcmp(pam_type,"MD_10")==0) { in init_stats()
60 else if (strcmp(pam_type,"MD10")==0) { in init_stats()
64 else if (strcmp(pam_type,"MD_20")==0) { in init_stats()
68 else if (strcmp(pam_type,"MD20")==0) { in init_stats()
72 else if (strcmp(pam_type,"MD_40")==0) { in init_stats()
[all …]
H A Dlalign2.c36 extern int init_stats(char *pam_type, int *gdelval, int *ggapval, int del_set);
109 char pam_type[10]; variable
/dports/biology/fasta3/fasta-36.3.8/src/
H A Dag_stats.c17 ag_parm(char *pam_type, int gdelval, int ggapval) in ag_parm() argument
29 if (strcmp(pam_type,"BL50")==0 || strcmp(pam_type,"BLOSUM50")==0) in ag_parm()
31 else if (strcmp(pam_type,"BL62")==0 || strcmp(pam_type,"BLOSUM62")==0) in ag_parm()
33 else if (strcmp(pam_type,"P250")==0) in ag_parm()
35 else if (strcmp(pam_type,"P120")==0) in ag_parm()
37 else if (strcmp(pam_type,"MD10")==0) in ag_parm()
39 else if (strcmp(pam_type,"MD20")==0) in ag_parm()
41 else if (strcmp(pam_type,"MD40")==0) in ag_parm()
43 else if (strcmp(pam_type,"DNA")==0 || strcmp(pam_type,"+5/-4")==0) in ag_parm()