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Searched refs:pamfact (Results 1 – 12 of 12) sorted by relevance

/dports/biology/fasta/fasta/
H A Dprdf.c122 int pamfact = 1; /* flag for using pam values for kfact */ variable
444 sscanf(cptr,"%d",&pamfact);
445 if (pamfact==1) pamfact = -2; else pamfact=0;
512 if (pamfact>=0) pamfact = 0;
542 if (pamfact == -1) pamfact=0;
543 else if (pamfact== -2) pamfact=1;
583 if (pamfact) {
589 if (pamfact)
H A Dfffasta.c320 int pamfact= 1; /* flag for using pam values for kfact */ variable
1107 sscanf(cptr,"%d",&pamfact);
1108 if (pamfact==1) pamfact= -2; else pamfact = 0;
1259 if (pamfact>=0) pamfact = 0;
1296 if (pamfact == -1) pamfact=0;
1297 else if (pamfact== -2) pamfact=1;
1337 if (pamfact) {
1344 if (pamfact)
2201 if (pamfact) strncpy(hline,"variable pamfact",sizeof(hline));
H A Drelease.v1614 Corrected urdf.c (rdf2) to use pamfact properly with DNA
H A Dprss.c81 int pamfact = 1; /* flag for using pam values for kfact */ variable
433 if (pamfact>=0) pamfact = 0;
/dports/biology/fasta3/fasta-36.3.8/src/
H A Dparam.h18 int pamfact; member
H A Ddropnfa.c130 int pamfact; in init_work() local
200 pamfact = ppst->param_u.fa.pamfact; in init_work()
204 if (pamfact == -1) pamfact = 0; in init_work()
205 else if (pamfact == -2) pamfact = 1; in init_work()
276 if (pamfact) { in init_work()
289 if (pamfact) { in init_work()
H A Ddropfx2.c210 int pamfact; in init_work() local
269 pamfact = ppst->param_u.fa.pamfact; in init_work()
273 if (pamfact == -1) in init_work()
274 pamfact = 0; in init_work()
275 else if (pamfact == -2) in init_work()
276 pamfact = 1; in init_work()
410 if (pamfact) { in init_work()
426 if (pamfact) in init_work()
H A Ddropfz3.c392 int pamfact; in init_work() local
451 pamfact = ppst->param_u.fa.pamfact; in init_work()
515 if (pamfact == -1) in init_work()
516 pamfact = 0; in init_work()
517 else if (pamfact == -2) in init_work()
518 pamfact = 1; in init_work()
591 if (pamfact) { in init_work()
603 if (pamfact) in init_work()
H A Ddropfx.c208 int pamfact; in init_work() local
267 pamfact = ppst->param_u.fa.pamfact; in init_work()
271 if (pamfact == -1) in init_work()
272 pamfact = 0; in init_work()
273 else if (pamfact == -2) in init_work()
274 pamfact = 1; in init_work()
408 if (pamfact) { in init_work()
424 if (pamfact) in init_work()
H A Ddropfz2.c392 int pamfact; in init_work() local
451 pamfact = ppst->param_u.fa.pamfact; in init_work()
515 if (pamfact == -1) in init_work()
516 pamfact = 0; in init_work()
517 else if (pamfact == -2) in init_work()
518 pamfact = 1; in init_work()
591 if (pamfact) { in init_work()
603 if (pamfact) in init_work()
H A Dinitfa.c966 ppst->param_u.fa.pamfact = 1; in f_initenv()
1646 if (ppst->param_u.fa.pamfact >= 0) ppst->param_u.fa.pamfact = 0; in resetp()
H A Ddropfs2.c106 int pamfact; in init_work() local