| /dports/biology/bedtools/bedtools2-2.30.0/src/fastaFromBed/ |
| H A D | fastaFromBedMain.cpp | 57 int parameterLength = (int)strlen(argv[i]); in fastafrombed_main() local
59 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in fastafrombed_main()
60 (PARAMETER_CHECK("--help", 5, parameterLength))) { in fastafrombed_main()
70 int parameterLength = (int)strlen(argv[i]); in fastafrombed_main() local
72 if(PARAMETER_CHECK("-fi", 3, parameterLength)) { in fastafrombed_main()
79 else if(PARAMETER_CHECK("-bed", 4, parameterLength)) { in fastafrombed_main()
86 else if(PARAMETER_CHECK("-fo", 3, parameterLength)) { in fastafrombed_main()
93 else if(PARAMETER_CHECK("-name", 5, parameterLength)) { in fastafrombed_main()
105 else if(PARAMETER_CHECK("-tab", 4, parameterLength)) { in fastafrombed_main()
112 else if(PARAMETER_CHECK("-s", 2, parameterLength)) { in fastafrombed_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/multiBamCov/ |
| H A D | multiBamCovMain.cpp | 54 int parameterLength = (int)strlen(argv[i]); in multibamcov_main() local
56 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in multibamcov_main()
57 (PARAMETER_CHECK("--help", 5, parameterLength))) { in multibamcov_main()
67 int parameterLength = (int)strlen(argv[i]); in multibamcov_main() local
69 if(PARAMETER_CHECK("-bed", 4, parameterLength)) { in multibamcov_main()
93 else if(PARAMETER_CHECK("-f", 2, parameterLength)) { in multibamcov_main()
100 else if(PARAMETER_CHECK("-r", 2, parameterLength)) { in multibamcov_main()
103 else if(PARAMETER_CHECK("-q", 2, parameterLength)) { in multibamcov_main()
109 else if(PARAMETER_CHECK("-p", 2, parameterLength)) { in multibamcov_main()
112 else if(PARAMETER_CHECK("-D", 2, parameterLength)) { in multibamcov_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/windowBed/ |
| H A D | windowMain.cpp | 60 int parameterLength = (int)strlen(argv[i]); in window_main() local
62 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in window_main()
63 (PARAMETER_CHECK("--help", 5, parameterLength))) { in window_main()
73 int parameterLength = (int)strlen(argv[i]); in window_main() local
75 if(PARAMETER_CHECK("-a", 2, parameterLength)) { in window_main()
90 else if(PARAMETER_CHECK("-b", 2, parameterLength)) { in window_main()
100 else if(PARAMETER_CHECK("-u", 2, parameterLength)) { in window_main()
103 else if(PARAMETER_CHECK("-c", 2, parameterLength)) { in window_main()
106 else if (PARAMETER_CHECK("-v", 2, parameterLength)) { in window_main()
118 else if (PARAMETER_CHECK("-w", 2, parameterLength)) { in window_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/genomeCoverageBed/ |
| H A D | genomeCoverageMain.cpp | 64 int parameterLength = (int)strlen(argv[i]); in genomecoverage_main() local
66 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in genomecoverage_main()
67 (PARAMETER_CHECK("--help", 5, parameterLength))) { in genomecoverage_main()
77 int parameterLength = (int)strlen(argv[i]); in genomecoverage_main() local
79 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in genomecoverage_main()
94 else if(PARAMETER_CHECK("-g", 2, parameterLength)) { in genomecoverage_main()
101 else if(PARAMETER_CHECK("-d", 2, parameterLength)) { in genomecoverage_main()
104 else if(PARAMETER_CHECK("-dz", 3, parameterLength)) { in genomecoverage_main()
108 else if(PARAMETER_CHECK("-bg", 3, parameterLength)) { in genomecoverage_main()
148 else if(PARAMETER_CHECK("-3", 2, parameterLength)) { in genomecoverage_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/sortBed/ |
| H A D | sortMain.cpp | 48 int parameterLength = (int)strlen(argv[i]); in sort_main() local
50 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in sort_main()
51 (PARAMETER_CHECK("--help", 5, parameterLength))) { in sort_main()
61 int parameterLength = (int)strlen(argv[i]); in sort_main() local
63 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in sort_main()
70 else if(PARAMETER_CHECK("-sizeA", 6, parameterLength)) { in sort_main()
74 else if(PARAMETER_CHECK("-sizeD", 6, parameterLength)) { in sort_main()
78 else if(PARAMETER_CHECK("-chrThenSizeA", 13, parameterLength)) { in sort_main()
94 else if(PARAMETER_CHECK("-faidx", 6, parameterLength)) { in sort_main()
102 else if(PARAMETER_CHECK("-g", 2, parameterLength)) { in sort_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/shuffleBed/ |
| H A D | shuffleBedMain.cpp | 54 int parameterLength = (int)strlen(argv[i]); in shuffle_main() local
56 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in shuffle_main()
57 (PARAMETER_CHECK("--help", 5, parameterLength))) { in shuffle_main()
67 int parameterLength = (int)strlen(argv[i]); in shuffle_main() local
69 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in shuffle_main()
75 else if(PARAMETER_CHECK("-g", 2, parameterLength)) { in shuffle_main()
82 else if(PARAMETER_CHECK("-excl", 5, parameterLength)) { in shuffle_main()
89 else if(PARAMETER_CHECK("-incl", 5, parameterLength)) { in shuffle_main()
96 else if(PARAMETER_CHECK("-seed", 5, parameterLength)) { in shuffle_main()
103 else if(PARAMETER_CHECK("-chrom", 6, parameterLength)) { in shuffle_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/pairToBed/ |
| H A D | pairToBedMain.cpp | 55 int parameterLength = (int)strlen(argv[i]); in pairtobed_main() local
57 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in pairtobed_main()
58 (PARAMETER_CHECK("--help", 5, parameterLength))) { in pairtobed_main()
68 int parameterLength = (int)strlen(argv[i]); in pairtobed_main() local
70 if(PARAMETER_CHECK("-a", 2, parameterLength)) { in pairtobed_main()
78 else if(PARAMETER_CHECK("-abam", 5, parameterLength)) { in pairtobed_main()
86 else if(PARAMETER_CHECK("-b", 2, parameterLength)) { in pairtobed_main()
96 else if(PARAMETER_CHECK("-ed", 3, parameterLength)) { in pairtobed_main()
106 else if(PARAMETER_CHECK("-f", 2, parameterLength)) { in pairtobed_main()
113 else if (PARAMETER_CHECK("-s", 2, parameterLength)) { in pairtobed_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/pairToPair/ |
| H A D | pairToPairMain.cpp | 53 int parameterLength = (int)strlen(argv[i]); in pairtopair_main() local
55 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in pairtopair_main()
56 (PARAMETER_CHECK("--help", 5, parameterLength))) { in pairtopair_main()
66 int parameterLength = (int)strlen(argv[i]); in pairtopair_main() local
68 if(PARAMETER_CHECK("-a", 2, parameterLength)) { in pairtopair_main()
75 else if(PARAMETER_CHECK("-b", 2, parameterLength)) { in pairtopair_main()
82 else if(PARAMETER_CHECK("-type", 5, parameterLength)) { in pairtopair_main()
89 else if(PARAMETER_CHECK("-f", 2, parameterLength)) { in pairtopair_main()
103 else if(PARAMETER_CHECK("-ss", 3, parameterLength)) { in pairtopair_main()
106 else if(PARAMETER_CHECK("-rdn", 4, parameterLength)) { in pairtopair_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/nucBed/ |
| H A D | nucBedMain.cpp | 50 int parameterLength = (int)strlen(argv[i]); in nuc_main() local
52 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in nuc_main()
53 (PARAMETER_CHECK("--help", 5, parameterLength))) { in nuc_main()
63 int parameterLength = (int)strlen(argv[i]); in nuc_main() local
65 if(PARAMETER_CHECK("-fi", 3, parameterLength)) { in nuc_main()
72 else if(PARAMETER_CHECK("-bed", 4, parameterLength)) { in nuc_main()
79 else if(PARAMETER_CHECK("-seq", 4, parameterLength)) { in nuc_main()
82 else if(PARAMETER_CHECK("-s", 2, parameterLength)) { in nuc_main()
85 else if(PARAMETER_CHECK("-C", 2, parameterLength)) { in nuc_main()
88 else if(PARAMETER_CHECK("-pattern", 8, parameterLength)) { in nuc_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/maskFastaFromBed/ |
| H A D | maskFastaFromBedMain.cpp | 51 int parameterLength = (int)strlen(argv[i]); in maskfastafrombed_main() local
53 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in maskfastafrombed_main()
54 (PARAMETER_CHECK("--help", 5, parameterLength))) { in maskfastafrombed_main()
64 int parameterLength = (int)strlen(argv[i]); in maskfastafrombed_main() local
66 if(PARAMETER_CHECK("-fi", 3, parameterLength)) { in maskfastafrombed_main()
73 else if(PARAMETER_CHECK("-fo", 3, parameterLength)) { in maskfastafrombed_main()
80 else if(PARAMETER_CHECK("-bed", 4, parameterLength)) { in maskfastafrombed_main()
87 else if(PARAMETER_CHECK("-soft", 5, parameterLength)) { in maskfastafrombed_main()
90 else if(PARAMETER_CHECK("-mc", 3, parameterLength)) { in maskfastafrombed_main()
103 else if(PARAMETER_CHECK("-fullHeader", 11, parameterLength)) { in maskfastafrombed_main()
|
| /dports/biology/bedtools/bedtools2-2.30.0/src/tagBam/ |
| H A D | tagBamMain.cpp | 57 int parameterLength = (int)strlen(argv[i]); in tagbam_main() local
59 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in tagbam_main()
60 (PARAMETER_CHECK("--help", 5, parameterLength))) { in tagbam_main()
70 int parameterLength = (int)strlen(argv[i]); in tagbam_main() local
72 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in tagbam_main()
79 else if(PARAMETER_CHECK("-files", 6, parameterLength)) { in tagbam_main()
93 else if(PARAMETER_CHECK("-labels", 7, parameterLength)) { in tagbam_main()
116 else if (PARAMETER_CHECK("-s", 2, parameterLength)) { in tagbam_main()
119 else if (PARAMETER_CHECK("-S", 2, parameterLength)) { in tagbam_main()
122 else if(PARAMETER_CHECK("-f", 2, parameterLength)) { in tagbam_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/annotateBed/ |
| H A D | annotateMain.cpp | 50 int parameterLength = (int)strlen(argv[i]); in annotate_main() local
52 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in annotate_main()
53 (PARAMETER_CHECK("--help", 5, parameterLength))) { in annotate_main()
63 int parameterLength = (int)strlen(argv[i]); in annotate_main() local
65 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in annotate_main()
72 else if(PARAMETER_CHECK("-files", 6, parameterLength)) { in annotate_main()
86 else if(PARAMETER_CHECK("-names", 6, parameterLength)) { in annotate_main()
99 else if(PARAMETER_CHECK("-counts", 7, parameterLength)) { in annotate_main()
102 else if(PARAMETER_CHECK("-both", 5, parameterLength)) { in annotate_main()
105 else if (PARAMETER_CHECK("-s", 2, parameterLength)) { in annotate_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/flankBed/ |
| H A D | flankBedMain.cpp | 49 int parameterLength = (int)strlen(argv[i]); in flank_main() local
51 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in flank_main()
52 (PARAMETER_CHECK("--help", 5, parameterLength))) { in flank_main()
62 int parameterLength = (int)strlen(argv[i]); in flank_main() local
64 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in flank_main()
70 else if(PARAMETER_CHECK("-g", 2, parameterLength)) { in flank_main()
77 else if(PARAMETER_CHECK("-l", 2, parameterLength)) { in flank_main()
84 else if(PARAMETER_CHECK("-r", 2, parameterLength)) { in flank_main()
91 else if(PARAMETER_CHECK("-b", 2, parameterLength)) { in flank_main()
99 else if(PARAMETER_CHECK("-s", 2, parameterLength)) { in flank_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/multiIntersectBed/ |
| H A D | multiIntersectBedMain.cpp | 64 int parameterLength = (int)strlen(argv[i]); in multiintersect_main() local
66 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in multiintersect_main()
67 (PARAMETER_CHECK("--help", 5, parameterLength))) { in multiintersect_main()
80 int parameterLength = (int)strlen(argv[i]); in multiintersect_main() local
82 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in multiintersect_main()
96 else if(PARAMETER_CHECK("-names", 6, parameterLength)) { in multiintersect_main()
110 else if(PARAMETER_CHECK("-g", 2, parameterLength)) { in multiintersect_main()
117 else if(PARAMETER_CHECK("-filler", 7, parameterLength)) { in multiintersect_main()
124 else if(PARAMETER_CHECK("-header", 7, parameterLength)) { in multiintersect_main()
127 else if(PARAMETER_CHECK("-empty", 6, parameterLength)) { in multiintersect_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/slopBed/ |
| H A D | slopBedMain.cpp | 49 int parameterLength = (int)strlen(argv[i]); in slop_main() local
51 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in slop_main()
52 (PARAMETER_CHECK("--help", 5, parameterLength))) { in slop_main()
62 int parameterLength = (int)strlen(argv[i]); in slop_main() local
64 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in slop_main()
70 else if(PARAMETER_CHECK("-g", 2, parameterLength)) { in slop_main()
77 else if(PARAMETER_CHECK("-l", 2, parameterLength)) { in slop_main()
84 else if(PARAMETER_CHECK("-r", 2, parameterLength)) { in slop_main()
91 else if(PARAMETER_CHECK("-b", 2, parameterLength)) { in slop_main()
99 else if(PARAMETER_CHECK("-s", 2, parameterLength)) { in slop_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/shiftBed/ |
| H A D | shiftBedMain.cpp | 46 int parameterLength = (int)strlen(argv[i]); in shift_main() local
48 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in shift_main()
49 (PARAMETER_CHECK("--help", 5, parameterLength))) { in shift_main()
59 int parameterLength = (int)strlen(argv[i]); in shift_main() local
61 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in shift_main()
67 else if(PARAMETER_CHECK("-g", 2, parameterLength)) { in shift_main()
74 else if(PARAMETER_CHECK("-p", 2, parameterLength)) { in shift_main()
81 else if(PARAMETER_CHECK("-m", 2, parameterLength)) { in shift_main()
88 else if(PARAMETER_CHECK("-s", 2, parameterLength)) { in shift_main()
96 else if(PARAMETER_CHECK("-pct", 4, parameterLength)) { in shift_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/unionBedGraphs/ |
| H A D | unionBedGraphsMain.cpp | 64 int parameterLength = (int)strlen(argv[i]); in unionbedgraphs_main() local
66 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in unionbedgraphs_main()
67 (PARAMETER_CHECK("--help", 5, parameterLength))) { in unionbedgraphs_main()
80 int parameterLength = (int)strlen(argv[i]); in unionbedgraphs_main() local
82 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in unionbedgraphs_main()
96 else if(PARAMETER_CHECK("-names", 6, parameterLength)) { in unionbedgraphs_main()
110 else if(PARAMETER_CHECK("-g", 2, parameterLength)) { in unionbedgraphs_main()
117 else if(PARAMETER_CHECK("-filler", 7, parameterLength)) { in unionbedgraphs_main()
124 else if(PARAMETER_CHECK("-header", 7, parameterLength)) { in unionbedgraphs_main()
127 else if(PARAMETER_CHECK("-empty", 6, parameterLength)) { in unionbedgraphs_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/linksBed/ |
| H A D | linksMain.cpp | 42 int parameterLength = (int)strlen(argv[i]); in links_main() local
44 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in links_main()
45 (PARAMETER_CHECK("--help", 5, parameterLength))) { in links_main()
55 int parameterLength = (int)strlen(argv[i]); in links_main() local
57 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in links_main()
63 else if(PARAMETER_CHECK("-base", 5, parameterLength)) { in links_main()
69 else if(PARAMETER_CHECK("-org", 4, parameterLength)) { in links_main()
75 else if(PARAMETER_CHECK("-db", 3, parameterLength)) { in links_main()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/bamToFastq/ |
| H A D | bamToFastqMain.cpp | 52 int parameterLength = (int)strlen(argv[i]); in bamtofastq_main() local
54 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in bamtofastq_main()
55 (PARAMETER_CHECK("--help", 5, parameterLength))) { in bamtofastq_main()
66 int parameterLength = (int)strlen(argv[i]); in bamtofastq_main() local
68 if (PARAMETER_CHECK("-i", 2, parameterLength)) { in bamtofastq_main()
75 else if (PARAMETER_CHECK("-fq", 3, parameterLength)) { in bamtofastq_main()
82 else if (PARAMETER_CHECK("-fq2", 4, parameterLength)) { in bamtofastq_main()
90 else if (PARAMETER_CHECK("-tags", 5, parameterLength)) { in bamtofastq_main()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/reldist/ |
| H A D | reldistMain.cpp | 45 int parameterLength = (int)strlen(argv[i]); in reldist_main() local
47 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in reldist_main()
48 (PARAMETER_CHECK("--help", 5, parameterLength))) { in reldist_main()
58 int parameterLength = (int)strlen(argv[i]); in reldist_main() local
60 if(PARAMETER_CHECK("-a", 2, parameterLength)) { in reldist_main()
67 else if(PARAMETER_CHECK("-b", 2, parameterLength)) { in reldist_main()
74 else if(PARAMETER_CHECK("-detail", 7, parameterLength)) { in reldist_main()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/randomBed/ |
| H A D | randomBedMain.cpp | 43 int parameterLength = (int)strlen(argv[i]); in random_main() local
45 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in random_main()
46 (PARAMETER_CHECK("--help", 5, parameterLength))) { in random_main()
56 int parameterLength = (int)strlen(argv[i]); in random_main() local
58 if(PARAMETER_CHECK("-g", 2, parameterLength)) { in random_main()
65 else if(PARAMETER_CHECK("-seed", 5, parameterLength)) { in random_main()
72 else if(PARAMETER_CHECK("-l", 2, parameterLength)) { in random_main()
78 else if(PARAMETER_CHECK("-n", 2, parameterLength)) { in random_main()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/bedToIgv/ |
| H A D | bedToIgv.cpp | 57 int parameterLength = (int)strlen(argv[i]); in bedtoigv_main() local
59 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in bedtoigv_main()
60 (PARAMETER_CHECK("--help", 5, parameterLength))) { in bedtoigv_main()
70 int parameterLength = (int)strlen(argv[i]); in bedtoigv_main() local
72 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in bedtoigv_main()
78 else if(PARAMETER_CHECK("-path", 5, parameterLength)) { in bedtoigv_main()
84 else if(PARAMETER_CHECK("-sort", 5, parameterLength)) { in bedtoigv_main()
90 else if(PARAMETER_CHECK("-sess", 5, parameterLength)) { in bedtoigv_main()
96 else if(PARAMETER_CHECK("-clps", 5, parameterLength)) { in bedtoigv_main()
99 else if(PARAMETER_CHECK("-name", 5, parameterLength)) { in bedtoigv_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/clusterBed/ |
| H A D | clusterMain.cpp | 42 int parameterLength = (int)strlen(argv[i]); in cluster_main() local
44 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in cluster_main()
45 (PARAMETER_CHECK("--help", 5, parameterLength))) { in cluster_main()
55 int parameterLength = (int)strlen(argv[i]); in cluster_main() local
57 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in cluster_main()
64 else if(PARAMETER_CHECK("-d", 2, parameterLength)) { in cluster_main()
71 else if (PARAMETER_CHECK("-s", 2, parameterLength)) { in cluster_main()
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| /dports/biology/bedtools/bedtools2-2.30.0/src/windowMaker/ |
| H A D | windowMakerMain.cpp | 50 int parameterLength = (int)strlen(argv[i]); in windowmaker_main() local
52 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in windowmaker_main()
53 (PARAMETER_CHECK("--help", 5, parameterLength))) { in windowmaker_main()
63 int parameterLength = (int)strlen(argv[i]); in windowmaker_main() local
65 if(PARAMETER_CHECK("-g", 2, parameterLength)) { in windowmaker_main()
73 else if(PARAMETER_CHECK("-b", 2, parameterLength)) { in windowmaker_main()
81 else if(PARAMETER_CHECK("-w", 2, parameterLength)) { in windowmaker_main()
88 else if(PARAMETER_CHECK("-s", 2, parameterLength)) { in windowmaker_main()
95 else if(PARAMETER_CHECK("-n", 2, parameterLength)) { in windowmaker_main()
102 else if(PARAMETER_CHECK("-i", 2, parameterLength)) { in windowmaker_main()
[all …]
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| /dports/biology/bedtools/bedtools2-2.30.0/src/bamToBed/ |
| H A D | bamToBed.cpp | 99 int parameterLength = (int)strlen(argv[i]); in bamtobed_main() local
101 if((PARAMETER_CHECK("-h", 2, parameterLength)) || in bamtobed_main()
102 (PARAMETER_CHECK("--help", 5, parameterLength))) { in bamtobed_main()
112 int parameterLength = (int)strlen(argv[i]); in bamtobed_main() local
114 if(PARAMETER_CHECK("-i", 2, parameterLength)) { in bamtobed_main()
120 else if(PARAMETER_CHECK("-bedpe", 6, parameterLength)) { in bamtobed_main()
133 else if(PARAMETER_CHECK("-ed", 3, parameterLength)) { in bamtobed_main()
140 else if(PARAMETER_CHECK("-as", 3, parameterLength)) { in bamtobed_main()
143 else if(PARAMETER_CHECK("-novo", 5, parameterLength)) { in bamtobed_main()
146 else if(PARAMETER_CHECK("-bwa", 4, parameterLength)) { in bamtobed_main()
[all …]
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