/dports/math/cppad/CppAD-20210000.8/include/cppad/local/sparse/ |
H A D | internal.hpp | 110 const sparse_rc<SizeVector>& pattern_in ) in set_internal_pattern() argument 128 const SizeVector& row( pattern_in.row() ); in set_internal_pattern() 129 const SizeVector& col( pattern_in.col() ); in set_internal_pattern() 155 const vectorBool& pattern_in ) in set_internal_pattern() argument 167 { bool flag = pattern_in[i * nc + j]; in set_internal_pattern() 169 flag = pattern_in[j * nr + i]; in set_internal_pattern() 192 const vector<bool>& pattern_in ) in set_internal_pattern() argument 204 { bool flag = pattern_in[i * nc + j]; in set_internal_pattern() 206 flag = pattern_in[j * nr + i]; in set_internal_pattern() 242 while( itr != pattern_in[j].end() ) in set_internal_pattern() [all …]
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/dports/math/SCIP/scip-7.0.3/src/cppad/local/ |
H A D | sparse_internal.hpp | 108 const sparse_rc<SizeVector>& pattern_in ) in set_internal_sparsity() argument 115 CPPAD_ASSERT_UNKNOWN( pattern_in.nc() == nr ); in set_internal_sparsity() 119 CPPAD_ASSERT_UNKNOWN( pattern_in.nc() == nc ); in set_internal_sparsity() 126 const SizeVector& row( pattern_in.row() ); in set_internal_sparsity() 127 const SizeVector& col( pattern_in.col() ); in set_internal_sparsity() 165 { bool flag = pattern_in[i * nc + j]; in set_internal_sparsity() 167 flag = pattern_in[j * nr + i]; in set_internal_sparsity() 202 { bool flag = pattern_in[i * nc + j]; in set_internal_sparsity() 204 flag = pattern_in[j * nr + i]; in set_internal_sparsity() 240 while( itr != pattern_in[j].end() ) in set_internal_sparsity() [all …]
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/dports/math/cppad/CppAD-20210000.8/include/cppad/core/chkpoint_two/ |
H A D | ctor.hpp | 152 sparse_rc< vector<size_t> > pattern_in; in chkpoint_two() local 157 pattern_in.resize(n, n, n); in chkpoint_two() 159 pattern_in.set(k, k, k); in chkpoint_two() 161 pattern_in, in chkpoint_two() 170 pattern_in.resize(m, m, m); in chkpoint_two() 172 pattern_in.set(k, k, k); in chkpoint_two() 174 pattern_in, in chkpoint_two()
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/dports/math/SCIP/scip-7.0.3/src/cppad/core/ |
H A D | rev_jac_sparsity.hpp | 166 const sparse_rc<SizeVector>& pattern_in , in rev_jac_sparsity() argument 172 size_t nr_in = pattern_in.nr(); in rev_jac_sparsity() 173 size_t nc_in = pattern_in.nc(); in rev_jac_sparsity() 203 pattern_in in rev_jac_sparsity() 232 pattern_in in rev_jac_sparsity()
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H A D | for_jac_sparsity.hpp | 209 const sparse_rc<SizeVector>& pattern_in , in for_jac_sparsity() argument 215 size_t nr_in = pattern_in.nr(); in for_jac_sparsity() 216 size_t nc_in = pattern_in.nc(); in for_jac_sparsity() 243 pattern_in in for_jac_sparsity() 273 pattern_in in for_jac_sparsity()
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/dports/math/cppad/CppAD-20210000.8/include/cppad/core/ |
H A D | for_jac_sparsity.hpp | 212 const sparse_rc<SizeVector>& pattern_in , in for_jac_sparsity() argument 222 size_t nr_in = pattern_in.nr(); in for_jac_sparsity() 223 size_t nc_in = pattern_in.nc(); in for_jac_sparsity() 250 pattern_in in for_jac_sparsity() 282 pattern_in in for_jac_sparsity()
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H A D | rev_jac_sparsity.hpp | 165 const sparse_rc<SizeVector>& pattern_in , in rev_jac_sparsity() argument 175 size_t nr_in = pattern_in.nr(); in rev_jac_sparsity() 176 size_t nc_in = pattern_in.nc(); in rev_jac_sparsity() 206 pattern_in in rev_jac_sparsity() 237 pattern_in in rev_jac_sparsity()
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/dports/math/cppad/CppAD-20210000.8/example/chkpoint_two/ |
H A D | compare.cpp | 156 CppAD::sparse_rc<size_vector> pattern_in, pattern_not, pattern_yes; in compare() local 157 pattern_in.resize(nx, nx, nx); in compare() 159 pattern_in.set(k, k, k); in compare() 165 pattern_in, transpose, dependency, internal_bool, pattern_not in compare() 167 pattern_in.resize(nz, nz, nz); in compare() 169 pattern_in.set(k, k, k); in compare() 172 pattern_in, transpose, dependency, internal_bool, pattern_yes in compare()
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/dports/math/cppad/CppAD-20210000.8/example/atomic_three/ |
H A D | mat_mul.cpp | 177 CppAD::sparse_rc< CPPAD_TESTVECTOR(size_t) > pattern_in, pattern_out; in mat_mul() local 184 { pattern_in.resize(n, n, n); in mat_mul() 186 pattern_in.set(j, j, j); in mat_mul() 188 pattern_in, transpose, dependency, internal_bool, pattern_out in mat_mul() 192 { pattern_in.resize(m, m, m); in mat_mul() 194 pattern_in.set(i, i, i); in mat_mul() 196 pattern_in, transpose, dependency, internal_bool, pattern_out in mat_mul()
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H A D | reciprocal.cpp | 346 CppAD::sparse_rc< CPPAD_TESTVECTOR(size_t) > pattern_in, pattern_out; in reciprocal() local 347 pattern_in.resize(1, 1, 1); in reciprocal() 348 pattern_in.set(0, 0, 0); in reciprocal() 353 pattern_in, transpose, dependency, internal_bool, pattern_out in reciprocal() 363 pattern_in, transpose, dependency, internal_bool, pattern_out in reciprocal()
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H A D | jac_sparsity.cpp | 246 CppAD::sparse_rc< CPPAD_TESTVECTOR(size_t) > pattern_in(nnz, nnz, nnz); in use_jac_sparsity() local 248 pattern_in.set(k, k, k); in use_jac_sparsity() 257 pattern_in, transpose, dependency, internal_bool, pattern_out in use_jac_sparsity() 262 pattern_in, transpose, dependency, internal_bool, pattern_out in use_jac_sparsity()
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H A D | norm_sq.cpp | 313 CppAD::sparse_rc< CPPAD_TESTVECTOR(size_t) > pattern_in, pattern_out; in norm_sq() local 314 pattern_in.resize(m, m, m); in norm_sq() 316 pattern_in.set(i, i, i); in norm_sq() 321 pattern_in, transpose, dependency, internal_bool, pattern_out in norm_sq()
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/dports/math/cppad/CppAD-20210000.8/example/sparse/ |
H A D | rc_sparsity.cpp | 104 sparse_rc<s_vector> pattern_in(n, n, n); in forward_jac() local 106 pattern_in.set(k, k, k); in forward_jac() 114 pattern_in, transpose, dependency, internal_bool, pattern_out in forward_jac() 142 sparse_rc<s_vector> pattern_in(m, m, m); in reverse_jac() local 144 pattern_in.set(k, k, k); in reverse_jac() 152 pattern_in, transpose, dependency, internal_bool, pattern_out in reverse_jac() 275 sparse_rc<s_vector> pattern_in(n, n, n); in reverse_hes() local 277 pattern_in.set(j, j, j); in reverse_hes() 285 pattern_in, transpose, dependency, internal_bool, pattern_out in reverse_hes()
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H A D | rev_jac_sparsity.cpp | 61 sparsity pattern_in(nr, nc, nnz_in); in rev_jac_sparsity() local 65 pattern_in.set(k, r, c); in rev_jac_sparsity() 73 pattern_in, transpose, dependency, internal_bool, pattern_out in rev_jac_sparsity() 93 pattern_in, transpose, dependency, internal_bool, pattern_out in rev_jac_sparsity()
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H A D | for_jac_sparsity.cpp | 61 sparsity pattern_in(nr, nc, nnz_in); in for_jac_sparsity() local 65 pattern_in.set(k, r, c); in for_jac_sparsity() 74 pattern_in, transpose, dependency, internal_bool, pattern_out in for_jac_sparsity() 99 pattern_in, transpose, dependency, internal_bool, pattern_out in for_jac_sparsity()
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H A D | sparse_jac_for.cpp | 95 sparse_rc<s_vector> pattern_in; in sparse_jac_for() local 96 pattern_in.resize(n, n, n); in sparse_jac_for() 98 pattern_in.set(k, k, k); in sparse_jac_for() 106 pattern_in, transpose, dependency, internal_bool, pattern_jac in sparse_jac_for()
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H A D | rev_hes_sparsity.cpp | 59 sparsity pattern_in(nr, nc, nnz_in); in rev_hes_sparsity() local 63 pattern_in.set(k, r, c); in rev_hes_sparsity() 71 pattern_in, transpose, dependency, internal_bool, pattern_out in rev_hes_sparsity()
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H A D | dependency.cpp | 108 sparsity pattern_in(nr, nc, nnz); in dependency() local 112 pattern_in.set(k, r, c); in dependency() 121 pattern_in, transpose, dependency, internal_bool, pattern_out in dependency()
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H A D | sparse_sub_hes.cpp | 64 sparsity pattern_in(nr, nc, nnz_in); in sparse_sub_hes() local 68 pattern_in.set(k, r, c); in sparse_sub_hes() 76 pattern_in, transpose, dependency, internal_bool, pattern_out in sparse_sub_hes()
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H A D | sparse_jac_rev.cpp | 92 sparse_rc<s_vector> pattern_in(m, m, m); in sparse_jac_rev() local 94 pattern_in.set(k, k, k); in sparse_jac_rev() 102 pattern_in, transpose, dependency, internal_bool, pattern_jac in sparse_jac_rev()
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/dports/math/cppad/CppAD-20210000.8/test_more/general/ |
H A D | subgraph_1.cpp | 148 sparsity pattern_in(n, n, n); in test_subgraph_sparsity() local 150 pattern_in.set(k, k, k); in test_subgraph_sparsity() 155 pattern_in, transpose, dependency, internal_bool, check_out in test_subgraph_sparsity() 168 pattern_in.resize(n, n, n-1); in test_subgraph_sparsity() 171 pattern_in.set(k, k, k); in test_subgraph_sparsity() 173 pattern_in.set(k, k+1, k+1); in test_subgraph_sparsity() 176 pattern_in, transpose, dependency, internal_bool, check_out in test_subgraph_sparsity()
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H A D | sparse_jac_work.cpp | 101 sparse_rc<s_vector> pattern_in(m, m, m); in sparse_jac_work() local 103 pattern_in.set(k, k, k); in sparse_jac_work() 111 pattern_in, transpose, dependency, internal_bool, pattern_jac in sparse_jac_work()
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
H A D | phi_lookup.c | 370 s_MakePatternUpperCase(char* pattern_in, char* pattern_out, int length) in s_MakePatternUpperCase() argument 374 ASSERT(pattern_in && pattern_out && length > 0); in s_MakePatternUpperCase() 378 if (pattern_in[index] >= 'a' && pattern_in[index] <= 'z') in s_MakePatternUpperCase() 379 pattern_out[index] = toupper(pattern_in[index]); in s_MakePatternUpperCase() 381 pattern_out[index] = pattern_in[index]; in s_MakePatternUpperCase() 388 SPHIPatternSearchBlkNew(char* pattern_in, Boolean is_dna, BlastScoreBlk* sbp, in SPHIPatternSearchBlkNew() argument 439 pattern_length = strlen(pattern_in); in SPHIPatternSearchBlkNew() 453 s_MakePatternUpperCase(pattern_in, pattern, pattern_length); in SPHIPatternSearchBlkNew()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
H A D | phi_lookup.c | 370 s_MakePatternUpperCase(char* pattern_in, char* pattern_out, int length) in s_MakePatternUpperCase() argument 374 ASSERT(pattern_in && pattern_out && length > 0); in s_MakePatternUpperCase() 378 if (pattern_in[index] >= 'a' && pattern_in[index] <= 'z') in s_MakePatternUpperCase() 379 pattern_out[index] = toupper(pattern_in[index]); in s_MakePatternUpperCase() 381 pattern_out[index] = pattern_in[index]; in s_MakePatternUpperCase() 388 SPHIPatternSearchBlkNew(char* pattern_in, Boolean is_dna, BlastScoreBlk* sbp, in SPHIPatternSearchBlkNew() argument 439 pattern_length = strlen(pattern_in); in SPHIPatternSearchBlkNew() 453 s_MakePatternUpperCase(pattern_in, pattern, pattern_length); in SPHIPatternSearchBlkNew()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
H A D | phi_lookup.c | 370 s_MakePatternUpperCase(char* pattern_in, char* pattern_out, int length) in s_MakePatternUpperCase() argument 374 ASSERT(pattern_in && pattern_out && length > 0); in s_MakePatternUpperCase() 378 if (pattern_in[index] >= 'a' && pattern_in[index] <= 'z') in s_MakePatternUpperCase() 379 pattern_out[index] = toupper(pattern_in[index]); in s_MakePatternUpperCase() 381 pattern_out[index] = pattern_in[index]; in s_MakePatternUpperCase() 388 SPHIPatternSearchBlkNew(char* pattern_in, Boolean is_dna, BlastScoreBlk* sbp, in SPHIPatternSearchBlkNew() argument 439 pattern_length = strlen(pattern_in); in SPHIPatternSearchBlkNew() 453 s_MakePatternUpperCase(pattern_in, pattern, pattern_length); in SPHIPatternSearchBlkNew()
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