Searched refs:perc_identity (Results 1 – 10 of 10) sorted by relevance
52 FloatHi bit_score, perc_identity; member124 info[i].bit_score, info[i].perc_identity); in Main()129 info[i].perc_identity); in Main()
242 FloatHi perc_identity; /**< This HSP's percent identity. */ member576 score_coverage = info[i].perc_identity; in ReclusterFromFile()622 FloatHi perc_identity; in GapAlignPercentIdentity() local646 perc_identity = ((FloatHi)identical) / total * 100; in GapAlignPercentIdentity()648 return perc_identity; in GapAlignPercentIdentity()798 perc_identity = GapAlignPercentIdentity(gap_align); in PrintNeighbors()816 perc_identity = 0; in PrintNeighbors()820 perc_identity += in PrintNeighbors()825 perc_identity = perc_identity / align_length * 100; in PrintNeighbors()833 score_coverage = perc_identity; in PrintNeighbors()[all …]
1073 align_length*search->pbp->mb_params->perc_identity) { in MegaBlastPrintSegments()1445 options->perc_identity = (FloatLo) myargs[ARG_PERC_IDENT].floatvalue; in Main_old()
1191 FloatLo perc_identity; /* Identity percentage cut-off */ member1242 FloatLo perc_identity; member1289 Boolean perc_identity; member1334 FloatLo perc_identity; /* Identity percentage cut-off */ member
6214 mask->perc_identity = FALSE; in BLAST_WizardOptionsMaskInit()6315 if(mask->perc_identity) in BLAST_Wizard()6316 out->perc_identity = options->perc_identity; in BLAST_Wizard()6318 if (out->perc_identity >= 95.0) { in BLAST_Wizard()6322 else if(out->perc_identity >= 85.0 in BLAST_Wizard()6323 || out->perc_identity == 0.0) { in BLAST_Wizard()6327 else if (out->perc_identity >= 80.0) { in BLAST_Wizard()6331 else if (out->perc_identity >= 75.0) { in BLAST_Wizard()6335 else if (out->perc_identity >= 60.0) { in BLAST_Wizard()6366 && out->perc_identity < 90.0) { in BLAST_Wizard()[all …]
3158 FloatHi perc_identity; in MegaBlastNtWordExtend() local3162 perc_identity = 100 * (1 - ((FloatHi) score) / hsp_length); in MegaBlastNtWordExtend()3164 perc_identity < MIN_NEIGHBOR_PERC_IDENTITY) in MegaBlastNtWordExtend()4064 if (search->pbp->mb_params->perc_identity > 0) { in MegaBlastSaveCurrentHitlist()4066 search->pbp->mb_params->perc_identity) { in MegaBlastSaveCurrentHitlist()4341 mb_params->perc_identity = options->perc_identity; in MegaBlastParameterBlkNew()
7080 options->perc_identity = (FloatLo) atof(values[index]); in parse_blast_options()9339 align_length * search->pbp->mb_params->perc_identity) { in RealBlastGetGappedAlignmentTraceback()
1149 options->perc_identity = (FloatLo) atof(chptr); in WWWCreateSearchOptions()1197 if (options->perc_identity >= 95.0 || options->perc_identity == 0.0) { in WWWCreateSearchOptions()1200 } else if (options->perc_identity >= 85.0) { in WWWCreateSearchOptions()1203 } else if (options->perc_identity >= 80.0) { in WWWCreateSearchOptions()1206 } else if (options->perc_identity >= 75.0) { in WWWCreateSearchOptions()1209 } else if (options->perc_identity >= 60.0) { in WWWCreateSearchOptions()1228 options->wordsize >= 11 && options->perc_identity < 90.0) { in WWWCreateSearchOptions()1230 if (options->perc_identity >= 85.0) { in WWWCreateSearchOptions()1233 } else if (options->perc_identity >= 80.0) { in WWWCreateSearchOptions()1236 } else if (options->perc_identity >= 75) { in WWWCreateSearchOptions()[all …]
403 double perc_identity; in PrintTabular() local406 perc_identity); in PrintTabular()408 ostr << perc_identity << sep; in PrintTabular()
854 parameters->percent_identity = (FloatHi) options->perc_identity; in BlastOptionsToParameters()2851 options->perc_identity = (FloatLo) parameters->percent_identity; in parametersToOptions()