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/dports/biology/plink/plink-ng-79b2df8c/2.0/pgenlibr/R/
H A DRcppExports.R8 GetRawSampleCt <- function(pgen) { argument
24 HardcallPhasePresent <- function(pgen) { argument
28 Buf <- function(pgen) { argument
29 .Call(`_pgenlibr_Buf`, pgen)
32 AlleleCodeBuf <- function(pgen) { argument
36 IntBuf <- function(pgen) { argument
37 .Call(`_pgenlibr_IntBuf`, pgen)
40 IntAlleleCodeBuf <- function(pgen) { argument
44 BoolBuf <- function(pgen) { argument
45 .Call(`_pgenlibr_BoolBuf`, pgen)
[all …]
/dports/biology/plink/plink-ng-79b2df8c/2.0/pgenlibr/src/
H A DRcppExports.cpp23 int GetRawSampleCt(List pgen);
68 bool HardcallPhasePresent(List pgen);
79 NumericVector Buf(List pgen);
85 rcpp_result_gen = Rcpp::wrap(Buf(pgen)); in _pgenlibr_Buf()
90 NumericVector AlleleCodeBuf(List pgen);
101 IntegerVector IntBuf(List pgen);
112 IntegerVector IntAlleleCodeBuf(List pgen);
123 LogicalVector BoolBuf(List pgen);
155 Read(pgen, buf, variant_num, allele_num); in _pgenlibr_Read()
211 void ClosePgen(List pgen);
[all …]
H A Dpgenlibr.cpp722 int GetRawSampleCt(List pgen) { in GetRawSampleCt() argument
723 if (strcmp_r_c(pgen[0], "pgen")) { in GetRawSampleCt()
772 if (strcmp_r_c(pgen[0], "pgen")) { in HardcallPhasePresent()
780 NumericVector Buf(List pgen) { in Buf() argument
781 if (strcmp_r_c(pgen[0], "pgen")) { in Buf()
790 if (strcmp_r_c(pgen[0], "pgen")) { in AlleleCodeBuf()
798 IntegerVector IntBuf(List pgen) { in IntBuf() argument
799 if (strcmp_r_c(pgen[0], "pgen")) { in IntBuf()
808 if (strcmp_r_c(pgen[0], "pgen")) { in IntAlleleCodeBuf()
816 LogicalVector BoolBuf(List pgen) { in BoolBuf() argument
[all …]
/dports/biology/plink/plink-ng-79b2df8c/2.0/Tests/TEST_DOSAGE_ROUND_TRIP/
H A Drun_tests.sh9 diff -q tmp_data.pgen tmp_data2.pgen
13 diff -q tmp_data.pgen tmp_data3.pgen
18 diff -q tmp_data.pgen tmp_data4.pgen
22 diff -q tmp_data.pgen tmp_data5.pgen
26 diff -q tmp_data.pgen tmp_data6.pgen
30 diff -q tmp_data.pgen tmp_data7.pgen
/dports/cad/xcircuit/xcircuit-3.10.30/
H A Dparameter.c338 genericptr *pgen; in indicateparams() local
474 genericptr *pgen; in exprsub() local
552 genericptr *pgen; in epsubstitute() local
657 for (pgen = TOPATH(&thiselem)->plist; pgen < in epsubstitute()
738 for (pgen = TOPATH(&thiselem)->plist; pgen < in epsubstitute()
2015 genericptr *pgen; in removenumericalp() local
2044 for (pgen = topobject->plist; pgen < topobject->plist in removenumericalp()
2259 genericptr *pgen; in searchinst() local
2263 for (pgen = topobj->plist; pgen < topobj->plist + topobj->parts; pgen++) { in searchinst()
2283 genericptr *pgen; in free_object_param() local
[all …]
H A Dselection.c416 genericptr pgen; in checkforcycles() local
482 ppoly = TOPOLY(pgen); in addcycle()
486 parc = TOARC(pgen); in addcycle()
669 ppoly = TOPOLY(pgen); in advancecycle()
673 parc = TOARC(pgen); in advancecycle()
753 parc = TOARC(pgen); in removecycle()
1508 genericptr *pgen; in label_connect_cycles() local
1515 for (pgen = topobject->plist; pgen < topobject->plist + in label_connect_cycles()
1569 for (pgen = topobject->plist; pgen < topobject->plist + in inst_connect_cycles()
1640 genericptr *pgen; in reset_cycles() local
[all …]
/dports/science/openbabel/openbabel-3.1.1/src/ops/
H A Dopalign.cpp123 OBOp* pgen = OBOp::FindType("gen2D"); in Do() local
124 if(pgen) in Do()
125 pgen->Do(pmol); in Do()
136 OBOp* pgen = (itr==pmap->end()) ? OBOp::FindType("gen2D") : OBOp::FindType("gen3D"); in Do() local
137 if(pgen) in Do()
138 pgen->Do(pmol); in Do()
147 OBOp* pgen = OBOp::FindType("gen2D"); in Do() local
148 if(pgen) in Do()
149 pgen->Do(pmol); in Do()
/dports/biology/plink/plink-ng-79b2df8c/2.0/Tests/TEST_MAF_FILTER/
H A Drun_tests.sh7 $1/pgen_compress tmp_data.bed tmp_data.pgen 2000
10 $1/pgen_compress -u new_filtered.pgen new_filtered.bed
14 diff -q new_filtered.pgen new_filtered2.pgen
/dports/misc/py-mxnet/incubator-mxnet-1.9.0/src/operator/random/
H A Dsampler.h89 RandGenerator<xpu, OType> *pgen, in Sample()
121 RandGenerator<xpu, OType> *pgen, in Sample()
148 RandGenerator<xpu, OType> *pgen, in Sample()
174 RandGenerator<xpu, OType> *pgen, in Sample()
176 LaunchRNG<SampleExponentialKernel<xpu>, xpu>(s, pgen, out.size(0), in Sample()
224 RandGenerator<xpu, OType> *pgen, in Sample()
228 RandGenerator<xpu, FType> *gen = reinterpret_cast<RandGenerator<xpu, FType> *>(pgen); in Sample()
284 RandGenerator<xpu, OType> *pgen, in Sample()
286 RandGenerator<xpu, float> *gen = reinterpret_cast<RandGenerator<xpu, float> *>(pgen); in Sample()
316 RandGenerator<xpu, OType> *pgen, in Sample()
[all …]
H A Dmultisample_op.h146 RandGenerator<xpu, OType> *pgen,
151 pgen, s);
159 RandGenerator<xpu, OType> *pgen,
165 pgen, s);
183 RandGenerator<xpu, OType> *pgen = ctx.requested[0].get_parallel_random<xpu, OType>();
184 SamplerCaller<xpu, IType, OType, Sampler, inum>::op(inputs, outputs, pgen, s);
/dports/misc/mxnet/incubator-mxnet-1.9.0/src/operator/random/
H A Dsampler.h89 RandGenerator<xpu, OType> *pgen, in Sample()
121 RandGenerator<xpu, OType> *pgen, in Sample()
148 RandGenerator<xpu, OType> *pgen, in Sample()
174 RandGenerator<xpu, OType> *pgen, in Sample()
176 LaunchRNG<SampleExponentialKernel<xpu>, xpu>(s, pgen, out.size(0), in Sample()
224 RandGenerator<xpu, OType> *pgen, in Sample()
228 RandGenerator<xpu, FType> *gen = reinterpret_cast<RandGenerator<xpu, FType> *>(pgen); in Sample()
284 RandGenerator<xpu, OType> *pgen, in Sample()
286 RandGenerator<xpu, float> *gen = reinterpret_cast<RandGenerator<xpu, float> *>(pgen); in Sample()
316 RandGenerator<xpu, OType> *pgen, in Sample()
[all …]
H A Dmultisample_op.h146 RandGenerator<xpu, OType> *pgen,
151 pgen, s);
159 RandGenerator<xpu, OType> *pgen,
165 pgen, s);
183 RandGenerator<xpu, OType> *pgen = ctx.requested[0].get_parallel_random<xpu, OType>();
184 SamplerCaller<xpu, IType, OType, Sampler, inum>::op(inputs, outputs, pgen, s);
/dports/math/gap/gap-4.11.0/pkg/cohomolo-1.6.8/standalone/progs.d/
H A Dnqmfns.c144 stkp=0; pgen=0; pex=0; pugen=0; exsgn=1; in collect()
149 spex[stkp]=pex; spugen[stkp]=pugen; spgen[stkp]=pgen; in collect()
152 e=expnt+pgen; in collect()
153 if (pgen==gen) in collect()
171 { if (pugen==pgen) pugen++; pgen++; pex= *(e+1); goto loop; } in collect()
173 { dp=comptr[gen]+2*pgen; p1= *dp; p2= *(dp+1); in collect()
176 { fac = (pugen==pgen) ? ex*pex*sgn : pex*sgn; setnr(p2); } in collect()
180 { if (pugen==pgen) in collect()
181 { spugen[stkp]= -pgen; in collect()
189 else pugen=pgen; in collect()
[all …]
H A Dnqfns.c240 stkp=0; pgen=0; pex=0; pugen=0; exsgn=1; in collect()
261 fpg=pgen; fpex=pex; in collect()
322 fpg=pgen; fpex=pex; in collect()
359 e=expnt+pgen; in collect()
360 if (pgen==gen) in collect()
383 { if (pugen==pgen) pugen++; pgen++; pex= *(e+1); goto loop; } in collect()
384 else if (pgen>facexp) {pex=0; goto loop; } in collect()
388 { if (pugen==pgen) in collect()
389 { spugen[stkp]= -pgen; in collect()
399 else pugen=pgen; in collect()
[all …]
H A Dnqfnsb.c240 stkp=0; pgen=0; pex=0; pugen=0; exsgn=1; in collect()
261 fpg=pgen; fpex=pex; in collect()
322 fpg=pgen; fpex=pex; in collect()
359 e=expnt+pgen; in collect()
360 if (pgen==gen) in collect()
383 { if (pugen==pgen) pugen++; pgen++; pex= *(e+1); goto loop; } in collect()
384 else if (pgen>facexp) {pex=0; goto loop; } in collect()
388 { if (pugen==pgen) in collect()
389 { spugen[stkp]= -pgen; in collect()
399 else pugen=pgen; in collect()
[all …]
H A Dnqp3.c15 nb,np,*rno,*covrel,**pgen,*ps,*pf,*v1,*v2,**cbmat; in comprels() local
55 pgen=pcb; fscanf(ip,"%hd",&np); in comprels()
57 { pgen[i]=rpf; fscanf(ip,"%hd",rpf); p=rpf; rpf+=(1+ *p); in comprels()
89 { wc=wf-2; k=covrel[j]; k1=k/2+1; m= *pgen[k1]; in comprels()
90 if (k%2==0) { sgn=1; ps=pgen[k1]+1; pf=ps+m-2; } in comprels()
91 else { sgn= -1; pf=pgen[k1]+1; ps=pf+m-2; } in comprels()
H A Dnqp3b.c15 nb,np,*rno,*covrel,**pgen,*ps,*pf,*v1,*v2,**cbmat; in comprels() local
55 pgen=pcb; fscanf(ip,"%d",&np); in comprels()
57 { pgen[i]=rpf; fscanf(ip,"%d",rpf); p=rpf; rpf+=(1+ *p); in comprels()
89 { wc=wf-2; k=covrel[j]; k1=k/2+1; m= *pgen[k1]; in comprels()
90 if (k%2==0) { sgn=1; ps=pgen[k1]+1; pf=ps+m-2; } in comprels()
91 else { sgn= -1; pf=pgen[k1]+1; ps=pf+m-2; } in comprels()
/dports/devel/emscripten/emscripten-2.0.3/tests/third_party/python/
H A Dreadme.md29 Now, you can run ``make``. It may fail trying to run ``pgen``.
34 ./configure && make Parser/pgen
37 Now, copy the generated ``Parser/pgen``
39 the ``pgen`` executable as executable:
42 chmod +x Parser/pgen
/dports/emulators/qemu/qemu-6.2.0/meson/test cases/frameworks/8 flex/
H A Dmeson.build24 pgen = generator(bison, variable
28 pfiles = pgen.process('parser.y')
30 e = executable('pgen', 'prog.c', build
/dports/emulators/qemu60/qemu-6.0.0/meson/test cases/frameworks/8 flex/
H A Dmeson.build24 pgen = generator(bison, variable
28 pfiles = pgen.process('parser.y')
30 e = executable('pgen', 'prog.c', build
/dports/emulators/qemu5/qemu-5.2.0/meson/test cases/frameworks/8 flex/
H A Dmeson.build24 pgen = generator(bison, variable
28 pfiles = pgen.process('parser.y')
30 e = executable('pgen', 'prog.c', build
/dports/devel/meson/meson-0.60.3/test cases/frameworks/8 flex/
H A Dmeson.build24 pgen = generator(bison, variable
28 pfiles = pgen.process('parser.y')
30 e = executable('pgen', 'prog.c', build
/dports/emulators/qemu-devel/qemu-de8ed1055c2ce18c95f597eb10df360dcb534f99/meson/test cases/frameworks/8 flex/
H A Dmeson.build24 pgen = generator(bison, variable
28 pfiles = pgen.process('parser.y')
30 e = executable('pgen', 'prog.c', build
/dports/devel/py-qutip/qutip-4.6.2/qutip/control/
H A Dpulseoptim.py453 pgen = optim.pulse_generator[j]
454 pgen.init_pulse()
455 init_amps[:, j] = pgen.gen_pulse()
457 pgen = optim.pulse_generator
459 init_amps[:, j] = pgen.gen_pulse()
1883 pgen = optim.pulse_generator[0]
1889 pgen.scaling = pulse_scaling
1890 pgen.offset = pulse_offset
1891 pgen.lbound = amp_lbound
1892 pgen.ubound = amp_ubound
[all …]
/dports/devel/tcllib/tcllib-1.20/modules/pt/tests/
H A Dpt_pgen.tests2 # Testsuite for pt::pgen.
8 # TODO testing of the pt::pgen command API (#args, options, outputs) ...
43 …test pt-pgen-parse:${parseimpl}-rde:${rdeimpl}-stack:${stackimpl}-f:${format}-g:${glabel}-t:${labe…
58 …test pt-pgen-parse:${parseimpl}-rde:${rdeimpl}-stack:${stackimpl}-f:${format}-g:${glabel}-t:${labe…
105 test pt-pgen-parse:${parseimpl}-rde:${rdeimpl}-stack:${stackimpl}-f:${format}-g:${glabel}-3.$n \
111 test pt-pgen-parse:${parseimpl}-rde:${rdeimpl}-stack:${stackimpl}-f:${format}-g:${glabel}-4.$n \
121 test pt-pgen-parse:${parseimpl}-rde:${rdeimpl}-stack:${stackimpl}-f:${format}-g:${glabel}-5.$n \

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