Searched refs:phaseinfo_alias (Results 1 – 5 of 5) sorted by relevance
/dports/biology/plink/plink-ng-79b2df8c/2.0/ |
H A D | pgenlib_ffi_support.cc | 124 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in GenoarrPhasedToHapCodes() local 134 uintptr_t phaseinfo_hw = phaseinfo_alias[widx]; in GenoarrPhasedToHapCodes() 409 Halfword* phaseinfo_alias = R_CAST(Halfword*, phaseinfo); in AlleleCodesToGenoarrUnsafe() local 455 phaseinfo_alias[widx] = phaseinfo_write_hw; in AlleleCodesToGenoarrUnsafe() 488 phaseinfo_alias[widx] = phaseinfo_write_hw; in AlleleCodesToGenoarrUnsafe()
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H A D | plink2_import.cc | 1343 phaseinfo_alias[widx] = phaseinfo_hw; in VcfConvertPhasedBiallelicDosageLine() 1975 phaseinfo_alias[widx] = phaseinfo_hw; in VcfConvertPhasedBiallelicLine() 2403 phaseinfo_alias[widx] = phaseinfo_hw; in VcfConvertPhasedMultiallelicLine() 5965 phaseinfo_alias[vidx] = cur_phaseinfo; in BcfConvertPhasedBiallelic() 6018 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedBiallelic() 6076 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedBiallelic() 6242 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedMultiallelic() 6359 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedMultiallelic() 6476 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedMultiallelic() 6592 phaseinfo_alias[widx] = phaseinfo_hw; in BcfConvertPhasedMultiallelic() [all …]
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H A D | plink2_export.cc | 2552 const unsigned char* phaseinfo_alias = R_CAST(const unsigned char*, pgv.phaseinfo); in ExportBgen13Thread() local 2564 uint32_t cur_phaseinfo4 = phaseinfo_alias[geno_byte_idx_d2]; in ExportBgen13Thread() 6955 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, pgvp->phaseinfo); in FillBcf3allelicPhasedGt() local 6980 const uint32_t phaseinfo_hw = phaseinfo_alias[widx]; in FillBcf3allelicPhasedGt() 7038 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, pgvp->phaseinfo); in FillBcf64allelicPhasedGt() local 7063 const uint32_t phaseinfo_hw = phaseinfo_alias[widx]; in FillBcf64allelicPhasedGt()
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/dports/biology/plink/plink-ng-79b2df8c/2.0/pgenlibr/src/ |
H A D | pgenlib_ffi_support.cpp | 124 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in GenoarrPhasedToHapCodes() local 134 uintptr_t phaseinfo_hw = phaseinfo_alias[widx]; in GenoarrPhasedToHapCodes() 409 Halfword* phaseinfo_alias = R_CAST(Halfword*, phaseinfo); in AlleleCodesToGenoarrUnsafe() local 455 phaseinfo_alias[widx] = phaseinfo_write_hw; in AlleleCodesToGenoarrUnsafe() 488 phaseinfo_alias[widx] = phaseinfo_write_hw; in AlleleCodesToGenoarrUnsafe()
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/dports/biology/plink/plink-ng-79b2df8c/2.0/include/ |
H A D | pgenlib_misc.cc | 1745 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in PhaseLookup4b() local 1778 phaseinfo_hw_shifted = phaseinfo_alias[widx]; in PhaseLookup4b() 1854 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in PhaseLookup8b() local 1884 phaseinfo_hw_shifted = phaseinfo_alias[widx]; in PhaseLookup8b() 1902 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in PhaseLookup8b() local 1932 phaseinfo_hw_shifted = phaseinfo_alias[widx]; in PhaseLookup8b() 2008 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in PhaseXNohhLookup4b() local 2246 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in VcfPhaseLookup4b() local 2272 phaseinfo_hw_shifted = phaseinfo_alias[widx]; in VcfPhaseLookup4b() 2382 const Halfword* phaseinfo_alias = R_CAST(const Halfword*, phaseinfo); in VcfPhaseLookup2b() local [all …]
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