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Searched refs:pheno_ctl (Results 1 – 5 of 5) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_psam.cc333 const uint32_t pheno_ctl = BitCtToWordCt(pheno_ct); in LoadPsam() local
351 bigstack_calloc_w(pheno_ctl, &categorical_phenos) || in LoadPsam()
352 bigstack_calloc_w(pheno_ctl, &quantitative_phenos))) { in LoadPsam()
400 categorical_pheno_ct = PopcountWords(categorical_phenos, pheno_ctl); in LoadPsam()
H A Dplink2_glm.cc11386 const uint32_t pheno_ctl = BitCtToWordCt(pheno_ct); in GlmMain() local
11388 if (unlikely(bigstack_alloc_w(pheno_ctl, &pheno_include))) { in GlmMain()
11410 bigstack_alloc_w(pheno_ctl, &pheno_batch) || in GlmMain()
11445 ZeroWArr(pheno_ctl, pheno_batch); in GlmMain()
11464 uint32_t batch_size = PopcountWords(pheno_batch, pheno_ctl); in GlmMain()
11499 BitvecInvmask(pheno_batch, pheno_ctl, pheno_include); in GlmMain()
11510 BitvecInvmask(pheno_batch, pheno_ctl, pheno_include); in GlmMain()
11520 BitvecInvmask(pheno_batch, pheno_ctl, pheno_include); in GlmMain()
11718 batch_size = PopcountWords(pheno_batch, pheno_ctl); in GlmMain()
11736 BitvecInvmask(pheno_batch, pheno_ctl, pheno_include); in GlmMain()
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H A Dplink2_misc.cc2762 const uint32_t pheno_ctl = BitCtToWordCt(pheno_ct); in PhenoVarianceStandardize() local
2764 if (unlikely(bigstack_calloc_w(pheno_ctl, &phenos_to_transform))) { in PhenoVarianceStandardize()
2798 const uint32_t pheno_transform_ct = PopcountWords(phenos_to_transform, pheno_ctl); in PhenoVarianceStandardize()
2891 const uint32_t pheno_ctl = BitCtToWordCt(pheno_ct); in PhenoQuantileNormalize() local
2893 if (unlikely(bigstack_calloc_w(pheno_ctl, &phenos_to_transform))) { in PhenoQuantileNormalize()
2927 const uint32_t pheno_transform_ct = PopcountWords(phenos_to_transform, pheno_ctl); in PhenoQuantileNormalize()
H A Dplink2_export.cc3692 const uint32_t pheno_ctl = BitCtToWordCt(pheno_ct); in ExportOxSample() local
3699 bigstack_calloc_w(pheno_ctl, &is_basic_categorical) || in ExportOxSample()
/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_ld.c1490 uint32_t pheno_ctl[2]; in flipscan() local
1585 pheno_ctl[is_case] = BITCT_TO_WORDCT(pheno_ct[is_case]); in flipscan()
1608 bigstack_alloc_ul(pheno_ctl[0] * 2, &(pheno_male_include2[0])) || in flipscan()
1609 bigstack_alloc_ul(pheno_ctl[1] * 2, &(pheno_male_include2[1])) || in flipscan()
1634 ulii = 2 + pheno_ct_192_long[is_case] - pheno_ctl[is_case] * 2; in flipscan()