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Searched refs:phred_score (Results 1 – 11 of 11) sorted by relevance

/dports/biology/bcftools/bcftools-1.14/
H A Dbcftools.h113 static inline double phred_score(double prob) in phred_score() function
H A Dvcfcnv.c1083 qual = phred_score(1 - qual/(isite - istart_pos)); in cnv_flush_viterbi()
1104 qual = phred_score(1 - qual/(isite - istart_pos)); in cnv_flush_viterbi()
H A Dvcfroh.c528 double qual = phred_score(1.0 - fwd[i*2 + state]); in flush_viterbi()
655 … "ROH\t%s\t%s\t%d\t%d\t%.1f\n", name,chr,smpl->sites[ioff+j]+1, state, phred_score(1.0-pval[state]… in flush_viterbi()
/dports/biology/bio-mocha/bcftools-1.14/
H A Dbcftools.h113 static inline double phred_score(double prob) in phred_score() function
H A Dvcfcnv.c1083 qual = phred_score(1 - qual/(isite - istart_pos)); in cnv_flush_viterbi()
1104 qual = phred_score(1 - qual/(isite - istart_pos)); in cnv_flush_viterbi()
H A Dvcfroh.c528 double qual = phred_score(1.0 - fwd[i*2 + state]); in flush_viterbi()
655 … "ROH\t%s\t%s\t%d\t%d\t%.1f\n", name,chr,smpl->sites[ioff+j]+1, state, phred_score(1.0-pval[state]… in flush_viterbi()
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dbcftools.h113 static inline double phred_score(double prob) in phred_score() function
H A Dvcfcnv.c1083 qual = phred_score(1 - qual/(isite - istart_pos)); in cnv_flush_viterbi()
1104 qual = phred_score(1 - qual/(isite - istart_pos)); in cnv_flush_viterbi()
H A Dvcfcnv.c.pysam.c1085 qual = phred_score(1 - qual/(isite - istart_pos)); in cnv_flush_viterbi()
1106 qual = phred_score(1 - qual/(isite - istart_pos)); in cnv_flush_viterbi()
H A Dvcfroh.c528 double qual = phred_score(1.0 - fwd[i*2 + state]); in flush_viterbi()
655 … "ROH\t%s\t%s\t%d\t%d\t%.1f\n", name,chr,smpl->sites[ioff+j]+1, state, phred_score(1.0-pval[state]… in flush_viterbi()
H A Dvcfroh.c.pysam.c530 double qual = phred_score(1.0 - fwd[i*2 + state]); in flush_viterbi()
657 … "ROH\t%s\t%s\t%d\t%d\t%.1f\n", name,chr,smpl->sites[ioff+j]+1, state, phred_score(1.0-pval[state]… in flush_viterbi()