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/dports/biology/bcftools/bcftools-1.14/
H A Dpeakfit.c149 hts_expand0(peak_t,pkf->npeaks,pkf->mpeaks,pkf->peaks); in peakfit_add_bounded_gaussian()
158 hts_expand0(double,pkf->nparams,pkf->mparams,pkf->params); in peakfit_add_bounded_gaussian()
239 hts_expand0(peak_t,pkf->npeaks,pkf->mpeaks,pkf->peaks); in peakfit_add_gaussian()
246 hts_expand0(double,pkf->nparams,pkf->mparams,pkf->params); in peakfit_add_gaussian()
319 hts_expand0(peak_t,pkf->npeaks,pkf->mpeaks,pkf->peaks); in peakfit_add_exp()
328 hts_expand0(double,pkf->nparams,pkf->mparams,pkf->params); in peakfit_add_exp()
403 pk->calc_f(pkf->nvals, pkf->xvals, pkf->vals, pk); in peakfit_calc_f()
431 pk->calc_df(pkf->nvals, pkf->xvals, pkf->yvals, pkf->vals, j, pk); in peakfit_calc_df()
452 pkf->peaks[i].calc_f(pkf->nvals, pkf->xvals, pkf->vals, &pkf->peaks[i]); in peakfit_evaluate()
468 pkf->peaks[i].print_func(&pkf->peaks[i], &pkf->str); in peakfit_sprint_func()
[all …]
H A Dpeakfit.h33 void peakfit_reset(peakfit_t *pkf);
34 void peakfit_destroy(peakfit_t *pkf);
36 void peakfit_add_gaussian(peakfit_t *pkf, double a, double b, double c, int fit_mask);
38 void peakfit_add_exp(peakfit_t *pkf, double a, double b, double c, int fit_mask);
39 void peakfit_set_mc(peakfit_t *pkf, double xmin, double xmax, int iparam, int niter);
40 double peakfit_run(peakfit_t *pkf, int nvals, double *xvals, double *yvals);
41 double peakfit_evaluate(peakfit_t *pkf);
43 void peakfit_verbose(peakfit_t *pkf, int level);
44 void peakfit_get_params(peakfit_t *pkf, int ipk, double *params, int nparams);
45 void peakfit_set_params(peakfit_t *pkf, int ipk, double *params, int nparams);
[all …]
H A Dpolysomy.c382 peakfit_t *pkf = peakfit_init(); in fit_curves() local
383 peakfit_verbose(pkf,args->verbose); in fit_curves()
415 peakfit_reset(pkf); in fit_curves()
423 peakfit_reset(pkf); in fit_curves()
425 peakfit_set_mc(pkf, 0.01,0.3,2,nmc); in fit_curves()
438 peakfit_reset(pkf); in fit_curves()
449 peakfit_reset(pkf); in fit_curves()
476 peakfit_reset(pkf); in fit_curves()
486 peakfit_reset(pkf); in fit_curves()
497 peakfit_reset(pkf); in fit_curves()
[all …]
/dports/biology/bio-mocha/bcftools-1.14/
H A Dpeakfit.c149 hts_expand0(peak_t,pkf->npeaks,pkf->mpeaks,pkf->peaks); in peakfit_add_bounded_gaussian()
158 hts_expand0(double,pkf->nparams,pkf->mparams,pkf->params); in peakfit_add_bounded_gaussian()
239 hts_expand0(peak_t,pkf->npeaks,pkf->mpeaks,pkf->peaks); in peakfit_add_gaussian()
246 hts_expand0(double,pkf->nparams,pkf->mparams,pkf->params); in peakfit_add_gaussian()
319 hts_expand0(peak_t,pkf->npeaks,pkf->mpeaks,pkf->peaks); in peakfit_add_exp()
328 hts_expand0(double,pkf->nparams,pkf->mparams,pkf->params); in peakfit_add_exp()
403 pk->calc_f(pkf->nvals, pkf->xvals, pkf->vals, pk); in peakfit_calc_f()
431 pk->calc_df(pkf->nvals, pkf->xvals, pkf->yvals, pkf->vals, j, pk); in peakfit_calc_df()
452 pkf->peaks[i].calc_f(pkf->nvals, pkf->xvals, pkf->vals, &pkf->peaks[i]); in peakfit_evaluate()
468 pkf->peaks[i].print_func(&pkf->peaks[i], &pkf->str); in peakfit_sprint_func()
[all …]
H A Dpeakfit.h33 void peakfit_reset(peakfit_t *pkf);
34 void peakfit_destroy(peakfit_t *pkf);
36 void peakfit_add_gaussian(peakfit_t *pkf, double a, double b, double c, int fit_mask);
38 void peakfit_add_exp(peakfit_t *pkf, double a, double b, double c, int fit_mask);
39 void peakfit_set_mc(peakfit_t *pkf, double xmin, double xmax, int iparam, int niter);
40 double peakfit_run(peakfit_t *pkf, int nvals, double *xvals, double *yvals);
41 double peakfit_evaluate(peakfit_t *pkf);
43 void peakfit_verbose(peakfit_t *pkf, int level);
44 void peakfit_get_params(peakfit_t *pkf, int ipk, double *params, int nparams);
45 void peakfit_set_params(peakfit_t *pkf, int ipk, double *params, int nparams);
[all …]
H A Dpolysomy.c382 peakfit_t *pkf = peakfit_init(); in fit_curves() local
383 peakfit_verbose(pkf,args->verbose); in fit_curves()
415 peakfit_reset(pkf); in fit_curves()
423 peakfit_reset(pkf); in fit_curves()
425 peakfit_set_mc(pkf, 0.01,0.3,2,nmc); in fit_curves()
438 peakfit_reset(pkf); in fit_curves()
449 peakfit_reset(pkf); in fit_curves()
476 peakfit_reset(pkf); in fit_curves()
486 peakfit_reset(pkf); in fit_curves()
497 peakfit_reset(pkf); in fit_curves()
[all …]
/dports/misc/concourse/vault-bdd38fca2cff/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/sysutils/gomplate/gomplate-3.9.0/vendor/github.com/hashicorp/vault/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/security/vault/vault-1.8.2/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/sysutils/helmfile/helmfile-0.138.7/vendor/github.com/hashicorp/vault/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/www/fabio/fabio-1.5.14/vendor/github.com/hashicorp/vault/vault-0.6.0/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/sysutils/helmfile/vault-f6547fa8e820/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/misc/concourse/concourse-6.7.2/vendor/github.com/hashicorp/vault/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/sysutils/gomplate/vault-sdk-v0.1.13/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/devel/gitlab-runner/gitlab-runner-8925d9a06fd8e452e2161a768462652a2a13111f/vendor/github.com/hashicorp/vault/vault-api-v1.0.4/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/devel/gitlab-runner/vault-sdk-v0.1.13/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/sysutils/istio/vault-sdk-v0.1.12/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/sysutils/istio/istio-1.6.7/vendor/github.com/hashicorp/vault/helper/pgpkeys/
H A Dflag_test.go60 pkf := new(PubKeyFilesFlag)
61 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
66 err = pkf.Set(tempDir + "/pubkey3")
72 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
73 t.Fatalf("Bad: %#v", pkf)
97 pkf := new(PubKeyFilesFlag)
98 err = pkf.Set(tempDir + "/pubkey1,@" + tempDir + "/pubkey2")
103 err = pkf.Set(tempDir + "/pubkey3")
109 if !reflect.DeepEqual(pkf.String(), fmt.Sprint(expected)) {
126 pkf := new(PubKeyFilesFlag)
[all …]
/dports/graphics/qgis-ltr/qgis-3.16.16/tests/src/python/
H A Dtest_qgsauxiliarystorage.py90 pkf = vl0.fields().field(vl0.fields().indexOf('pk'))
91 al0 = s0.createAuxiliaryLayer(pkf, vl0)
270 pkf = vl.fields().field(vl.fields().indexOf('pk'))
271 al = s.createAuxiliaryLayer(pkf, vl)
335 pkf = vl.fields().field(vl.fields().indexOf('pk'))
336 al = s.createAuxiliaryLayer(pkf, vl)
372 al = s.createAuxiliaryLayer(pkf, vl)
392 al = s.createAuxiliaryLayer(pkf, vl)
416 al = s.createAuxiliaryLayer(pkf, vl)
496 pkf = field
[all …]
/dports/devel/gitolite2/gitolite-2.3.1/src/
H A Dsshkeys-lint58 for my $pkf (@pubkeyfiles) {
59 my $fp = fprint($pkf);
60 msg 1, "$pkf appears to be a COPY of $pkf_by_fp{$fp}\n" if $pkf_by_fp{$fp};
61 $pkf_by_fp{$fp} ||= $pkf;
63 msg 0, "$pkf maps to $fpu\n";
/dports/science/afni/afni-AFNI_21.3.16/src/
H A Dnct.c110 double pkf,pkb,qkf,qkb , pgamf,pgamb,qgamf,qgamb ; in tnonc_s2p() local
128 pkf = exp(-dels+k*log(dels)-alng(k+1.0)) ; in tnonc_s2p()
129 pkb = pkf ; in tnonc_s2p()
143 rempois = 1.0 - pkf ; in tnonc_s2p()
145 sum = pkf*pbetaf+delosq2*qkf*qbetaf ; in tnonc_s2p()
152 pkf = pkf*dels/(k+i) ; in tnonc_s2p()
153 ptermf = pkf*pbetaf ; in tnonc_s2p()
161 rempois = rempois - pkf ; in tnonc_s2p()
/dports/graphics/qgis/qgis-3.22.3/tests/src/python/
H A Dtest_qgsauxiliarystorage.py96 pkf = vl0.fields().field(vl0.fields().indexOf('pk'))
97 al0 = s0.createAuxiliaryLayer(pkf, vl0)
277 al = s.createAuxiliaryLayer(pkf, vl)
342 al = s.createAuxiliaryLayer(pkf, vl)
378 al = s.createAuxiliaryLayer(pkf, vl)
398 al = s.createAuxiliaryLayer(pkf, vl)
456 al = s.createAuxiliaryLayer(pkf, vl)
548 al = s.createAuxiliaryLayer(pkf, vl)
613 al = s.createAuxiliaryLayer(pkf, vl)
693 pkf = field
[all …]
/dports/devel/gitolite/gitolite-3.6.12/src/commands/
H A Dsshkeys-lint65 for my $pkf (@pubkeyfiles) {
67 ( my $pkfsn = $pkf ) =~ s(^$kd/)();
69 my $fp = fprint($pkf);
/dports/security/gnupg/gnupg-2.3.3/tests/migrations/
H A DMakefile.am40 extended-pkf.scm \
44 extended-pkf.tar.asc \
/dports/science/libgridxc/libgridxc-libgridxc-0.9.6/src/
H A Dvv_vdwxc.F90395 real(dp),save :: pkf(nkf,nkf), d2pkfdkf2(nkf,nkf) local
401 pkf(:,ikf) = 0 ! ikf'th polynomial pkf(:,ikf) is one at kfmesh(ikf)
402 pkf(ikf,ikf) = 1 ! and zero at all other points
403 call spline( kfmesh, pkf(:,ikf), nkf, 1.e30_dp, 1.e30_dp, &
418 write(22,'(20e15.6)') kfmesh(ikf), pkf(:,ikf), d2pkfdkf2(:,ikf)
444 pkf0(ikf) = a*pkf(ikf0,ikf) + b*pkf(ikf0+1,ikf) &
447 dpkfdkf0(ikf) = - (pkf(ikf0,ikf) - pkf(ikf0+1,ikf)) / dk &

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