| /dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/ |
| H A D | IncludedProtoFactoryImpl.cpp | 53 QList<PortDescriptor *> portDescs; in _getScriptProto() local
86 portDescs << new PortDescriptor(inDesc, inSet, /*input*/ true); in _getScriptProto()
89 portDescs << new PortDescriptor(outDesc, outSet, /*input*/ false, /*multi*/ true); in _getScriptProto()
97 ActorPrototype *proto = new IntegralBusActorPrototype(desc, portDescs, attribs); in _getScriptProto()
110 QList<PortDescriptor *> portDescs; in _getExternalToolProto() local
124 …portDescs << new PortDescriptor(Descriptor(dcfg.attributeId, dcfg.attrName, dcfg.description), inp… in _getExternalToolProto()
143 portDescs << new PortDescriptor(outDesc, outSet, false, true); in _getExternalToolProto()
195 ActorPrototype *proto = new IntegralBusActorPrototype(desc, portDescs, attribs); in _getExternalToolProto()
213 QList<PortDescriptor *> portDescs; in _getSchemaActorProto() local
248 portDescs << port; in _getSchemaActorProto()
[all …]
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| H A D | GetReadListWorker.cpp | 120 QList<PortDescriptor *> portDescs; in init() local
126 portDescs << new PortDescriptor(Descriptor(OUT_PORT_ID, in init()
144 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
155 QList<PortDescriptor *> portDescs; in init() local
162 portDescs << new PortDescriptor(Descriptor(OUT_PORT_ID, in init()
182 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | PassFilterWorker.cpp | 84 QList<PortDescriptor *> portDescs; in init() local
95 portDescs << new PortDescriptor("in-data", inTypeSet, true); in init()
96 portDescs << new PortDescriptor("filtered-data", outTypeSet, false); in init()
107 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | MSA2SequenceWorker.cpp | 103 QList<PortDescriptor *> portDescs; in init() local
109 portDescs << new PortDescriptor(inPortDesc, inSet, true); in init()
115 portDescs << new PortDescriptor(outPortDesc, outSet, false); in init()
123 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | FilterAnnotationsByQualifierWorker.cpp | 100 QList<PortDescriptor *> portDescs; in init() local
111 …portDescs << new PortDescriptor(inDesc, DataTypePtr(new MapDataType("filter.anns", inputMap)), /*i… in init()
112 …portDescs << new PortDescriptor(outDesc, DataTypePtr(new MapDataType("filter.anns", inputMap)), /*… in init()
134 ActorPrototype *proto = new IntegralBusActorPrototype(desc, portDescs, attribs); in init()
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| H A D | ImportAnnotationsWorker.cpp | 150 QList<PortDescriptor *> portDescs; in init() local
156 portDescs << new PortDescriptor(inPortDesc, inSet, true); in init()
162 portDescs << new PortDescriptor(outPortDesc, outSet, false); in init()
173 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | MarkSequenceWorker.cpp | 121 QList<PortDescriptor *> portDescs; in init() local
133 portDescs << new PortDescriptor(inPd, inTypeSet, true); in init()
140 portDescs << new PortDescriptor(outPd, outTypeSet, false, true); in init()
149 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | GetFileListWorker.cpp | 89 QList<PortDescriptor *> portDescs; in init() local
96 …portDescs << new PortDescriptor(Descriptor(OUT_PORT_ID, GetFileListWorker::tr("Output URL"), GetFi… in init()
112 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | AssemblyToSequenceWorker.cpp | 142 QList<PortDescriptor *> portDescs; in init() local
152 portDescs << new PortDescriptor(BasePorts::IN_ASSEMBLY_PORT_ID(), inTypeSet, true); in init()
153 portDescs << new PortDescriptor(BasePorts::OUT_SEQ_PORT_ID(), outTypeSet, false); in init()
162 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | MultiplexerWorker.cpp | 258 QList<PortDescriptor *> portDescs; in init() local
268 portDescs << new PortDescriptor(inputDesc1, emptyTypeSet, true); in init()
269 portDescs << new PortDescriptor(inputDesc2, emptyTypeSet, true); in init()
273 portDescs << new PortDescriptor(outputDesc, emptyTypeSet, false, true); in init()
307 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | StatisticWorkers.cpp | 55 QList<PortDescriptor *> portDescs; in init() local
68 …portDescs << new PortDescriptor(inDesc, DataTypePtr(new MapDataType("filter.anns", inputMap)), /*i… in init()
69 …portDescs << new PortDescriptor(outDesc, DataTypePtr(new MapDataType("filter.anns", outputMap)), /… in init()
92 ActorPrototype *proto = new IntegralBusActorPrototype(desc, portDescs, attribs); in init()
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| H A D | FilterAnnotationsWorker.cpp | 101 QList<PortDescriptor *> portDescs; in init() local
112 …portDescs << new PortDescriptor(inDesc, DataTypePtr(new MapDataType("filter.anns", inputMap)), /*i… in init()
113 …portDescs << new PortDescriptor(outDesc, DataTypePtr(new MapDataType("filter.anns", inputMap)), /*… in init()
135 ActorPrototype *proto = new IntegralBusActorPrototype(desc, portDescs, attribs); in init()
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| H A D | WriteVariationWorker.cpp | 120 QList<PortDescriptor *> portDescs; in init() local
130 portDescs << new PortDescriptor(inDesc, writeVariationsType, true); in init()
145 …WriteDocActorProto *childProto = new WriteDocActorProto(format, protoDesc, portDescs, inDesc.getId… in init()
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| H A D | Text2SequenceWorker.cpp | 146 QList<PortDescriptor *> portDescs; in init() local
152 portDescs << new PortDescriptor(inPortDesc, inSet, true); in init()
158 portDescs << new PortDescriptor(outPortDesc, outSet, false); in init()
177 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | GroupWorker.cpp | 173 QList<PortDescriptor *> portDescs; in init() local
179 portDescs << new PortDescriptor(inputDesc1, emptyTypeSet, true); in init()
187 portDescs << new PortDescriptor(outputDesc, outTypeSet, false, true); in init()
210 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| H A D | SequenceSplitWorker.cpp | 215 QList<PortDescriptor *> portDescs; in init() local
238 portDescs << new PortDescriptor(seqDesc, inSet, /*input*/ true); in init()
239 portDescs << new PortDescriptor(outDesc, outSet, /*input*/ false, /*multi*/ true); in init()
273 ActorPrototype *proto = new IntegralBusActorPrototype(desc, portDescs, attribs); in init()
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| H A D | WriteAssemblyWorkers.cpp | 160 QList<PortDescriptor *> portDescs; in init() local
170 portDescs << new PortDescriptor(inDesc, writeAssemblyType, true); in init()
190 …WriteDocActorProto *proto = new WriteDocActorProto(format, protoDesc, portDescs, inDesc.getId(), a… in init()
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| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/umuscle/src/ |
| H A D | ProfileToProfileWorker.cpp | 204 QList<PortDescriptor *> portDescs; in init() local
216 …portDescs << new PortDescriptor(IN_PROFILES_PORT_ID, DataTypePtr(new MapDataType("in.profiles", in… in init()
220 …portDescs << new PortDescriptor(BasePorts::OUT_MSA_PORT_ID(), DataTypePtr(new MapDataType("out.msa… in init()
227 ActorPrototype *proto = new IntegralBusActorPrototype(protoD, portDescs, QList<Attribute *>()); in init()
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| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/peak2gene/ |
| H A D | Peak2GeneWorker.cpp | 185 QList<PortDescriptor *> portDescs; in init() local
199 portDescs << new PortDescriptor(inPortDesc, inTypeSet, true); in init()
226 portDescs << new PortDescriptor(outPortDesc, outTypeSet, false, true); in init()
300 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/conduct_go/ |
| H A D | ConductGOWorker.cpp | 131 QList<PortDescriptor *> portDescs; in init() local
145 portDescs << new PortDescriptor(inPortDesc, inTypeSet, true); in init()
191 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/utils/ |
| H A D | BaseShortReadsAlignerWorker.cpp | 372 QList<PortDescriptor *> portDescs; in getPortDescriptors() local
399 portDescs << readsDescriptor2; in getPortDescriptors()
400 portDescs << readsDescriptor; in getPortDescriptors()
415 portDescs << new PortDescriptor(outPortDesc, outTypeSet, false, true); in getPortDescriptors()
417 return portDescs; in getPortDescriptors()
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| /dports/biology/ugene/ugene-40.1/src/plugins/annotator/src/ |
| H A D | GeneByGeneReportWorker.cpp | 140 QList<PortDescriptor *> portDescs; in init() local
158 portDescs << new PortDescriptor(inPortDesc, inTypeSet, true); in init()
207 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/conservation_plot/ |
| H A D | ConservationPlotWorker.cpp | 174 QList<PortDescriptor *> portDescs; in init() local
188 portDescs << new PortDescriptor(inPortDesc, inTypeSet, true); in init()
261 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/seqpos/ |
| H A D | SeqPosWorker.cpp | 223 QList<PortDescriptor *> portDescs; in init() local
237 portDescs << new PortDescriptor(inPortDesc, inTypeSet, true); in init()
327 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/ceas/ |
| H A D | CEASReportWorker.cpp | 210 QList<PortDescriptor *> portDescs; in init() local
227 portDescs << new PortDescriptor(inPortDesc, inTypeSet, true); in init()
356 ActorPrototype *proto = new IntegralBusActorPrototype(protoDesc, portDescs, attrs); in init()
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