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Searched refs:posfile (Results 1 – 25 of 67) sorted by relevance

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/dports/biology/infernal/infernal-1.1.3/rmark/
H A Drmark-master.pl122 $posfile = "$benchmark_pfx.pos";
153 if (! -e $posfile) { die "$posfile doesn't exist"; }
158 $posfile = $pposfile;
162 $posfile = $wpposfile;
180 $posfile;
268 …ir $scriptdir $modeldir $resultdir $optsfile $resultdir/tbl.$i $msafile $posfile $fafile $resultdi…
272 …ir $scriptdir $modeldir $resultdir $optsfile $resultdir/tbl.$i $msafile $posfile $fafile $resultdi…
286 …dir $scriptdir $modeldir $resultdir $optsfile $resultdir/tbl$i $msafile $posfile $fafile $resultdi…
287 …dir $scriptdir $modeldir $resultdir $optsfile $resultdir/tbl$i $msafile $posfile $fafile $resultdi…
293 …ir $scriptdir $modeldir $resultdir $optsfile $resultdir/tbl.$i $msafile $posfile $fafile $resultdi…
[all …]
H A Drmark-mer.pl28 my $posfile = shift;
30 if (! -e $posfile) { die "$posfile doesn't exist"; }
63 open(POS, $posfile) || die "ERROR, couldn't open $posfile";
H A Dx-blastall30 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
59 if (! -e $posfile) { die "$posfile doesn't exist"; }
128 $command = "perl $idscript $posfile $sorttmpoutfile > $outfile";
H A Dx-blastn30 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
59 if (! -e $posfile) { die "$posfile doesn't exist"; }
128 $command = "perl $idscript $posfile $sorttmpoutfile > $outfile";
H A Dx-nhmmer34 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
58 if (! -e $posfile) { die "$posfile doesn't exist"; }
152 $command = "perl $idscript $posfile $sorttmpoutfile > $outfile";
H A Dx-wublast30 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
59 if (! -e $posfile) { die "$posfile doesn't exist"; }
182 $command = "perl $idscript $posfile $sorttmpoutfile > $outfile";
H A Drmark-idpositives.pl27 my($posfile, $outfile) = @ARGV;
30 if (! -e $posfile) { die "$posfile doesn't exist"; }
43 open(POS, "$posfile") || die "FAILED: to open $posfile";
H A Dx-nhmmer2cmsearch42 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
61 if (! -e $posfile) { die "$posfile doesn't exist"; }
271 $command = "perl $idscript $posfile $sorttmpoutfile > $outfile";
H A Dx-cmsearch66 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
100 if (! -e $posfile) { die "$posfile doesn't exist"; }
288 $command = "perl $idscript $posfile $sorttmpoutfile > $outfile";
H A Dx-rfamscan50 ($execdir, $scriptdir, $modeldir, $resultdir, $optsfile, $tblfile, $msafile, $posfile, $fafile, $ou…
89 if (! -e $posfile) { die "$posfile doesn't exist"; }
297 $command = "perl $idscript $posfile $sorttmpoutfile > $outfile";
/dports/textproc/p5-Lingua-Treebank/Lingua-Treebank-0.16/scripts/
H A Dvocabulary78 my $posfile;
85 'POS=s' => \$posfile,
127 if ($posfile) {
128 print_vocabulary($posfile, \%pos, $count);
129 print "\n" if ($posfile eq "-");
147 vocabulary [-NT ntfile] [-POS posfile] [-word wordfile] [-count]
163 Write the part of speech vocabulary to posfile
189 Note that giving a "-" argument for any of ntfile, posfile, or
/dports/games/fortunate/fortunate-3.1/fortune/
H A Dfortune.c100 char *datfile, *posfile; member
225 if ((fd = creat(Fortfile->posfile, 0666)) < 0) {
226 perror(Fortfile->posfile);
568 do_free(fp->posfile);
593 fp->was_pos_file = (access(fp->posfile, W_OK) >= 0);
620 fp->posfile = NULL; in new_fp()
665 auto char *datfile, *posfile; local
669 if (!is_fortfile(offensive, &datfile, &posfile, FALSE))
696 obscene->posfile = posfile;
1137 if ((fd = open(fp->posfile, 0)) < 0 ||
[all …]
/dports/devel/cdash/CDash-2-2-3/
H A DmanageCoverage.php185 $posfile = strpos($line,":"); variable
186 if($posfile !== false)
188 $file = trim(substr($line,0,$posfile));
189 $begauthor = $posfile+1;
/dports/science/cdo/cdo-2.0.0/src/
H A DIntgridtraj.cc56 auto posfile = cdo_operator_argv(0).c_str(); in Intgridtraj() local
57 auto fp = fopen(posfile, "r"); in Intgridtraj()
58 if (fp == nullptr) cdo_abort("Open failed on %s!", posfile); in Intgridtraj()
/dports/biology/protomol/protomol/examples/argon_400/
H A Dargon.lf.conf6 posfile argon.pdb
H A Dargon.npt.conf6 posfile argon.pdb
/dports/biology/protomol/protomol/examples/bpti_water_1101/
H A Dbpti.lf.conf5 posfile bpti.pdb
H A Dbpti.hmc.conf9 posfile bpti.pdb
H A Dbpti.shmc.conf7 posfile bpti.pdb
/dports/biology/protomol/protomol/examples/bpti_water_14281/
H A Dbpti.pbc.conf6 posfile bpti.pdb
H A Dbpti.shake.conf4 posfile bpti.pdb
H A Dbpti.ewald.conf9 posfile bpti.pdb
/dports/biology/protomol/protomol/examples/decalanine_66/
H A Dalanine.PLF.conf6 posfile alanine.pdb
H A Dalanine.Shake.conf6 posfile alanine.pdb
H A Dalanine.LF.conf6 posfile alanine.pdb

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