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/dports/science/agrum/aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320/src/testunits/module_BN/
H A DShaferShenoyIncrementalTestSuite.h282 __Potential posterior(posterior_joint(joint, evset)); in test_prior_with_targets_evidence()
288 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence()
315 __Potential posterior(posterior_joint(joint, evset)); in test_prior_with_targets_outside_evidence()
321 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_outside_evidence()
357 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
384 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
407 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
429 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
448 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
467 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
[all …]
H A DLazyPropagationIncrementalTestSuite.h282 __Potential posterior(posterior_joint(joint, evset)); in test_prior_with_targets_evidence()
288 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence()
315 __Potential posterior(posterior_joint(joint, evset)); in test_prior_with_targets_outside_evidence()
321 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_outside_evidence()
357 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
384 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
407 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
429 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
448 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
467 get_marginal(posterior.get(), BN_node_index[0])), in test_prior_with_targets_evidence_values_changed()
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H A DLazyPropagationTestSuite.h139 TS_ASSERT(equalPotentials(inf.posterior(i1), inf2.posterior(i1))) in testMarginal()
140 TS_ASSERT(equalPotentials(inf.posterior(i2), inf2.posterior(i2))) in testMarginal()
141 TS_ASSERT(equalPotentials(inf.posterior(i3), inf2.posterior(i3))) in testMarginal()
142 TS_ASSERT(equalPotentials(inf.posterior(i4), inf2.posterior(i4))) in testMarginal()
191 TS_ASSERT_EQUALS(inf.posterior(i1), inf2.posterior(i1)) in testMarginalWithEvidence()
192 TS_ASSERT_EQUALS(inf.posterior(i2), inf2.posterior(i2)) in testMarginalWithEvidence()
193 TS_ASSERT_EQUALS(inf.posterior(i3), inf2.posterior(i3)) in testMarginalWithEvidence()
194 TS_ASSERT_EQUALS(inf.posterior(i4), inf2.posterior(i4)) in testMarginalWithEvidence()
195 TS_ASSERT_EQUALS(inf.posterior(i5), inf2.posterior(i5)) in testMarginalWithEvidence()
924 -= ie.posterior(1).entropy() + ie.posterior(4).entropy() + ie.posterior(3).entropy(); in testJointMutualInformation()
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H A DVariableEliminationTestSuite.h345 TS_ASSERT(equalPotentials(inf1.posterior(node), inf2.posterior(node))) in testAsia()
370 TS_ASSERT(equalPotentials(inf1.posterior(node), inf2.posterior(node))) in testAlarm2()
412 TS_ASSERT(equalPotentials(inf1.posterior(node), inf2.posterior(node))) in testAlarm2()
413 TS_ASSERT(equalPotentials(inf1.posterior(node), inf3.posterior(node))) in testAlarm2()
414 TS_ASSERT(equalPotentials(inf1.posterior(node), inf4.posterior(node))) in testAlarm2()
425 TS_ASSERT(equalPotentials(inf1.posterior(node), inf5.posterior(node))) in testAlarm2()
476 TS_ASSERT(equalPotentials(inf1.posterior(xnode), inf2.posterior(xnode))) in testAsia2()
534 TS_ASSERT(equalPotentials(inf1.posterior(xnode), inf2.posterior(xnode))) in testAsia3()
595 equalPotentials(inf1.posterior(xnode), inf2.posterior(xnode)); in testAsia4()
645 TS_ASSERT_EQUALS(p_0, ie.posterior(0)) in testChgEvidence()
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H A DShaferShenoyInferenceTestSuite.h256 auto p = inf.posterior(0); in testEvidenceProbability()
271 auto p = inf.posterior(0); in testEvidenceProbability2()
335 TS_ASSERT(equalPotentials(inf1.posterior(node), inf2.posterior(node))) in testAsia()
360 TS_ASSERT(equalPotentials(inf1.posterior(node), inf2.posterior(node))) in testAlarm()
402 TS_ASSERT(equalPotentials(inf1.posterior(node), inf2.posterior(node))) in testAlarm()
403 TS_ASSERT(equalPotentials(inf1.posterior(node), inf3.posterior(node))) in testAlarm()
404 TS_ASSERT(equalPotentials(inf1.posterior(node), inf4.posterior(node))) in testAlarm()
414 TS_ASSERT(equalPotentials(inf1.posterior(node), inf5.posterior(node))) in testAlarm()
465 TS_ASSERT(equalPotentials(inf1.posterior(xnode), inf2.posterior(xnode))) in testAsia2()
521 TS_ASSERT(equalPotentials(inf1.posterior(xnode), inf2.posterior(xnode))) in testAsia3()
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H A DCompareInferencesTestSuite.h125 inf_ShaShe.posterior(i); in testInferencesWithNoEvidence()
127 inf_LazyProp.posterior(i); in testInferencesWithNoEvidence()
129 inf_ValElim.posterior(i); in testInferencesWithNoEvidence()
200 inf_LazyProp.posterior(i); in testInferencesWithHardEvidence()
202 inf_VarElim.posterior(i); in testInferencesWithHardEvidence()
261 inf_LazyProp.posterior(i); in testInferencesWithSoftEvidence()
263 inf_VarElim.posterior(i); in testInferencesWithSoftEvidence()
409 TS_GUM_ASSERT_THROWS_NOTHING(p_ve = ve.posterior(var_id)); in testAlarm()
410 TS_GUM_ASSERT_THROWS_NOTHING(p_ss = ss.posterior(var_id)); in testAlarm()
439 TS_GUM_ASSERT_THROWS_NOTHING(p_ve = ve.posterior(var_id)); in testAlarmWithHardEvidence()
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/dports/biology/figtree/figtree-1.4.4/release/common/
H A Dinfluenza.tree696 …posterior=0.7220694826293427,height_range={12.196479754438572,13.520993971916873},rate_median=0.00…
/dports/biology/p5-Bio-Phylo/Bio-Phylo-v2.0.1/t/
H A D50-replicate-tree.t251 …posterior=1.0,length_range={7.741614,16.83651},height_95%_HPD={19.835379000000017,26.2599760000000…
/dports/science/agrum/aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320/wrappers/pyAgrum/testunits/tests/
H A DAllIncrementalInferenceTestSuite.py106 self.assertEqual(self.ie.posterior("A"), self.joint.margSumIn(["A"]))
107 self.assertEqual(self.ie.posterior("C"), self.joint.margSumIn(["C"]))
108 self.assertEqual(self.ie.posterior("D"), self.joint.margSumIn(["D"]))
109 self.assertEqual(self.ie.posterior("H"), self.joint.margSumIn(["H"]))
115 self.assertEqual(self.ie.posterior("A"), self.joint.margSumIn(["A"]))
116 self.assertEqual(self.ie.posterior("C"), self.joint.margSumIn(["C"]))
119 p = self.ie.posterior("D")
121 p = self.ie.posterior("H")
137 self.assertEqual(self.ie.posterior("A"), posterior_joint.margSumIn(["A"]).normalize())
138 self.assertEqual(self.ie.posterior("F"), posterior_joint.margSumIn(["F"]).normalize())
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/dports/biology/hyphy/hyphy-2.5.33/tests/hbltests/libv3/
H A DFUBAR.wbf20 | 7 | 1 | 2.285 | 12.332 | Pos. posterior = 0.9120…
21 | 9 | 1 | 0.379 | 1.206 | Pos. posterior = 0.9060…
22 | 34 | 1 | 0.482 | 2.131 | Pos. posterior = 0.9508…
23 | 55 | 1 | 1.193 | 8.220 | Pos. posterior = 0.9580…
24 | 56 | 1 | 0.994 | 4.121 | Pos. posterior = 0.9062…
25 | 64 | 1 | 0.538 | 1.898 | Pos. posterior = 0.9120…
26 | 81 | 1 | 0.381 | 1.203 | Pos. posterior = 0.9035…
27 | 113 | 1 | 0.435 | 2.254 | Pos. posterior = 0.9687…
28 | 117 | 1 | 0.390 | 1.719 | Pos. posterior = 0.9451…
29 | 126 | 1 | 0.792 | 2.605 | Pos. posterior = 0.9169…
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/dports/math/py-baycomp/baycomp-1.0.2/docs/
H A Dposterior.rst4 Querying posterior distributions
7 The third way to use the library is to construct and query posterior
10 We construct the posterior distribution by calling the corresponding test
12 data set, we construct the posterior by
14 >>> posterior = CorrelatedTTest(nbc, j48)
18 >>> posterior.probs()
20 >>> fig = posterior.plot(names=("nbc", "j48"))
26 >>> posterior = SignedRankTest(nbc, j48, rope=1)
27 >>> posterior.probs()
29 >>> fig = posterior.plot(names=("nbc", "j48"))
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/dports/science/py-DendroPy/DendroPy-4.4.0/tests/data/trees/
H A Dpythonidae.beast.summary.tre78 …posterior=1.0,height_range={3.0302601152999955,12.926974564900007},length=18.927252290886376,lengt…
/dports/math/py-arviz/arviz-0.11.4/arviz/tests/external_tests/
H A Dtest_data_cmdstan.py59 def get_inference_data(self, posterior, **kwargs): argument
60 return from_cmdstan(posterior=posterior, **kwargs)
80 assert inference_data.posterior["y"].shape == (4, 100)
85 y_mean = inference_data.posterior["y"].mean(dim=dims)
88 x_mean = inference_data.posterior["x"].mean(dim=dims)
93 assert "comments" in inference_data.posterior.attrs
111 posterior=path,
159 posterior=path,
208 posterior=path,
244 posterior=path,
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H A Dtest_data_pystan.py43 posterior=data.obj,
67 posterior=data.obj,
92 posterior=data.obj,
114 posterior=data.obj,
129 posterior=data.obj,
239 _ = from_pystan(posterior=fit_test_grad)
243 _ = from_pystan(posterior=fit)
268 posterior = from_pystan(posterior=fit)
270 fails = check_multiple_attrs(test_dict, posterior)
301 idata = from_pystan(posterior=fit)
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/dports/science/agrum/aGrUM-29e540d8169268e8fe5d5c69bc4b2b1290f12320/src/testunits/module_MN/
H A DShaferShenoyMNInferenceTestSuite.h171 TS_ASSERT_DELTA(iemn.posterior(n).sum(), 1.0, 1e-8) in testClassicalInference()
181 gum::Potential< double > Cwithout_evB(iemn.posterior("C")); in testSeparationInInference()
182 gum::Potential< double > Ewithout_evB(iemn.posterior("E")); in testSeparationInInference()
189 gum::Potential< double > Cwith_evB0(iemn.posterior("C")); in testSeparationInInference()
190 gum::Potential< double > Ewith_evB0(iemn.posterior("E")); in testSeparationInInference()
197 gum::Potential< double > Cwith_evB1(iemn.posterior("C")); in testSeparationInInference()
198 gum::Potential< double > Ewith_evB1(iemn.posterior("E")); in testSeparationInInference()
216 TS_ASSERT_DELTA(iemn.posterior(n).sum(), 1.0, 1e-8) in testIndependencyInference()
241 TS_ASSERT_LESS_THAN((ie2.posterior(n) - ie.posterior(n)).abs().max(), 1e-8) in testIncrementalInference()
262 TS_ASSERT_LESS_THAN((ie2.posterior(n) - ie.posterior(n)).abs().max(), 1e-8) in testIncrementalInference()
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/dports/math/py-baycomp/baycomp-1.0.2/tests/
H A Dtest_single.py12 posterior = Posterior(42, 0, 1, nsamples=10)
15 posterior = Posterior(42, 2, 3, nsamples=10)
21 posterior.sample,
51 posterior.probs(), [0.25, 0.75])
55 posterior.probs(), [0.25, 0.15, 0.6])
66 self.assertEqual(posterior.mean, 1)
67 self.assertEqual(posterior.var, 2)
68 self.assertEqual(posterior.df, 3)
69 self.assertEqual(posterior.rope, 6)
70 self.assertEqual(posterior.meanx, 4)
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/dports/math/R-cran-MCMCpack/MCMCpack/R/
H A DMCMCdynamicIRT1d-b.R270 posterior <- .C("cMCMCdynamicIRT1d_b", functionVar
357 tau2samp <- matrix(posterior$tau2data,
358 posterior$tau2row,
359 posterior$tau2col)
366 posterior$thetarow,
376 betasamp <- matrix(posterior$betadata,
377 posterior$betarow,
378 posterior$betacol)
391 betasamp <- matrix(posterior$betadata,
392 posterior$betarow,
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H A DMCMCdynamicIRT1d.R520 posterior <- .C("cMCMCdynamicIRT1d", functionVar
607 tau2samp <- matrix(posterior$tau2data,
608 posterior$tau2row,
609 posterior$tau2col)
616 posterior$thetarow,
626 betasamp <- matrix(posterior$betadata,
627 posterior$betarow,
628 posterior$betacol)
641 betasamp <- matrix(posterior$betadata,
642 posterior$betarow,
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H A DMCMCnegbinChange.R303 posterior <- .C("cMCMCnegbinChange", functionVar
359 P.holder <- matrix(posterior$Pout, nstore, )
360 s.holder <- matrix(posterior$sout, nstore, )
361 ps.holder <- matrix(posterior$psout, n, )
362 nu.holder <- matrix(posterior$nuout, nstore, )
368 sr1.holder <- matrix(posterior$sr1out, nstore, )
369 sr2.holder <- matrix(posterior$sr2out, nstore, )
370 mr1.holder <- matrix(posterior$mr1out, nstore, )
402 attr(output, "rho.step") <- posterior$rhosizes
406 logmarglike <- posterior$logmarglikeholder
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H A DHDPHSMMnegbin.R304 posterior <- .C("cHDPHSMMnegbin", functionVar
365 P.holder <- matrix(posterior$Pout, nstore, )
366 s.holder <- matrix(posterior$sout, nstore, )
367 nu.holder <- matrix(posterior$nuout, nstore, )
368 rho.holder <- matrix(posterior$rhoout, nstore, )
374 sr1.holder <- matrix(posterior$sr1out, nstore, )
375 sr2.holder <- matrix(posterior$sr2out, nstore, )
376 mr1.holder <- matrix(posterior$mr1out, nstore, )
377 mr2.holder <- matrix(posterior$mr2out, nstore, )
405 attr(output, "rho.step") <- posterior$rhosizes
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H A DHDPHMMpoisson.R232 posterior <- .C("cHDPHMMpoisson", functionVar
283 beta.holder <- matrix(posterior$betaout, nstore, )
284 P.holder <- matrix(posterior$Pout, nstore, )
285 s.holder <- matrix(posterior$sout, nstore, )
290 sr1.holder <- matrix(posterior$sr1out, nstore, )
291 sr2.holder <- matrix(posterior$sr2out, nstore, )
292 mr1.holder <- matrix(posterior$mr1out, nstore, )
293 mr2.holder <- matrix(posterior$mr2out, nstore, )
319 attr(output, "gamma.store") <- posterior$gammaout
320 attr(output, "theta.store") <- posterior$thetaout
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H A DHDPHMMnegbin.R277 posterior <- .C("cHDPHMMnegbin", functionVar
338 P.holder <- matrix(posterior$Pout, nstore, )
339 s.holder <- matrix(posterior$sout, nstore, )
340 ps.holder <- matrix(posterior$psout, n, )
341 nu.holder <- matrix(posterior$nuout, nstore, )
347 sr1.holder <- matrix(posterior$sr1out, nstore, )
348 sr2.holder <- matrix(posterior$sr2out, nstore, )
349 mr1.holder <- matrix(posterior$mr1out, nstore, )
350 mr2.holder <- matrix(posterior$mr2out, nstore, )
378 attr(output, "rho.step") <- posterior$rhosizes
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/dports/science/py-GPy/GPy-1.10.0/GPy/models/
H A Dsparse_gp_minibatch.py14 from ..inference.latent_function_inference.posterior import Posterior
81 self.posterior = None
235 if self.posterior is None:
239 woodbury_inv = self.posterior._woodbury_inv
281 if self.posterior is None:
283 K=posterior._K, mean=None, cov=None, K_chol=posterior.K_chol)
289 if self.posterior is None:
293 woodbury_inv = self.posterior._woodbury_inv
308 woodbury_vector[:, d] = posterior.woodbury_vector
309 if self.posterior is None:
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/dports/science/dynare/dynare-4.6.4/contrib/ms-sbvar/switch_dw/switching/
H A Ddw_mdd_switch.c111 *in_posterior=RowM(posterior); in ComputeLogMarginalDensity_WaggonerZha()
114 (*I)=AddLogs(*I,ElementM(posterior,i,0) - ElementM(posterior,i,1)); in ComputeLogMarginalDensity_WaggonerZha()
127 (*I)=AddLogs(*I,ElementM(posterior,i,0) - ElementM(posterior,i,1)); in ComputeLogMarginalDensity_WaggonerZha()
142 (*I)=AddLogs(*I,ElementM(posterior,i,0) - ElementM(posterior,i,1)); in ComputeLogMarginalDensity_WaggonerZha()
153 if ((ElementM(posterior,i,1) >= L1) && (ElementM(posterior,i,0) <= L2)) in ComputeLogMarginalDensity_WaggonerZha()
156 (*I)=AddLogs(*I,ElementM(posterior,i,0) - ElementM(posterior,i,1)); in ComputeLogMarginalDensity_WaggonerZha()
183 if ((x=ElementM(posterior,i,1)-ElementM(posterior,i,0)-logr) < 0) in BridgeDifference()
252 if (log_c >= (tmp=ElementM(posterior,i,0)-ElementM(posterior,i,1))) in ComputeInverseLinear()
893 TMatrix posterior; in CreatePosterior() local
917 return posterior; in CreatePosterior()
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/dports/math/py-arviz/arviz-0.11.4/arviz/data/
H A Dio_pystan.py45 self.posterior = posterior
77 posterior = self.posterior
115 posterior = self.posterior
184 posterior = self.posterior
198 posterior = self.posterior
255 posterior = self.posterior
325 self.posterior = posterior
358 posterior = self.posterior
390 posterior = self.posterior
989 posterior=posterior,
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