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Searched refs:prevwarpi (Results 1 – 5 of 5) sorted by relevance

/dports/biology/mafft/mafft-7.267-without-extensions/core/
H A DGalign11.c210 int *prevwarpi = NULL; in G__align11() local
274 prevwarpi = AllocateIntVec( lgth2+1 ); in G__align11()
278 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in G__align11()
558 fpenalty_tmp = fpenalty_shift + fpenalty_ex * ( i - prevwarpi[j-1] + j - prevwarpj[j-1] ); in G__align11()
566 if( warpn && prevwarpi[j-1] == warpis[warpn-1] && prevwarpj[j-1] == warpjs[warpn-1] ) in G__align11()
575 warpis[warpn] = prevwarpi[j-1]; in G__align11()
645 intncpy( prevwarpi, warpi, lastj ); in G__align11()
658 free( prevwarpi ); in G__align11()
H A DLalign11.c255 int *prevwarpi = NULL; in L__align11() local
313 prevwarpi = AllocateIntVec( lgth2+1 ); in L__align11()
317 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in L__align11()
596 fpenalty_tmp = fpenalty_shift + fpenalty_ex * ( i - prevwarpi[j-1] + j - prevwarpj[j-1] ); in L__align11()
604 if( warpn && prevwarpi[j-1] == warpis[warpn-1] && prevwarpj[j-1] == warpjs[warpn-1] ) in L__align11()
613 warpis[warpn] = prevwarpi[j-1]; in L__align11()
685 intncpy( prevwarpi, warpi, lastj ); in L__align11()
698 free( prevwarpi ); in L__align11()
H A DpartSalignmm.c1015 int *prevwarpi = NULL; in partA__align() local
1127 prevwarpi = AllocateIntVec( lgth2+1 ); in partA__align()
1131 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in partA__align()
1532 warpis[warpn] = prevwarpi[j-1]; in partA__align()
1577 intncpy( prevwarpi, warpi, lastj ); in partA__align()
1589 free( prevwarpi ); in partA__align()
1703 int *prevwarpi = NULL; in partA__align_variousdist() local
1839 prevwarpi = AllocateIntVec( lgth2+1 ); in partA__align_variousdist()
2268 warpis[warpn] = prevwarpi[j-1]; in partA__align_variousdist()
2314 intncpy( prevwarpi, warpi, lastj ); in partA__align_variousdist()
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H A DSalignmm.c1074 int *prevwarpi = NULL; in A__align() local
1189 prevwarpi = AllocateIntVec( lgth2+1 ); in A__align()
1193 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in A__align()
1657 warpis[warpn] = prevwarpi[j-1]; in A__align()
1702 intncpy( prevwarpi, warpi, lastj ); in A__align()
1715 free( prevwarpi ); in A__align()
1841 int *prevwarpi = NULL; in A__align_variousdist() local
1982 prevwarpi = AllocateIntVec( lgth2+1 ); in A__align_variousdist()
2506 warpis[warpn] = prevwarpi[j-1]; in A__align_variousdist()
2551 intncpy( prevwarpi, warpi, lastj ); in A__align_variousdist()
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H A DDalignmm.c2776 int *prevwarpi = NULL; in D__align() local
2915 prevwarpi = AllocateIntVec( lgth2+1 ); in D__align()
2919 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in D__align()
4134 warpis[warpn] = prevwarpi[j-1]; in D__align()
4306 intncpy( prevwarpi, warpi, lastj ); in D__align()
4323 free( prevwarpi ); in D__align()
4612 int *prevwarpi = NULL; in D__align_variousdist() local
4785 prevwarpi = AllocateIntVec( lgth2+1 ); in D__align_variousdist()
6067 warpis[warpn] = prevwarpi[j-1]; in D__align_variousdist()
6239 intncpy( prevwarpi, warpi, lastj ); in D__align_variousdist()
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