Searched refs:prevwarpi (Results 1 – 5 of 5) sorted by relevance
/dports/biology/mafft/mafft-7.267-without-extensions/core/ |
H A D | Galign11.c | 210 int *prevwarpi = NULL; in G__align11() local 274 prevwarpi = AllocateIntVec( lgth2+1 ); in G__align11() 278 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in G__align11() 558 fpenalty_tmp = fpenalty_shift + fpenalty_ex * ( i - prevwarpi[j-1] + j - prevwarpj[j-1] ); in G__align11() 566 if( warpn && prevwarpi[j-1] == warpis[warpn-1] && prevwarpj[j-1] == warpjs[warpn-1] ) in G__align11() 575 warpis[warpn] = prevwarpi[j-1]; in G__align11() 645 intncpy( prevwarpi, warpi, lastj ); in G__align11() 658 free( prevwarpi ); in G__align11()
|
H A D | Lalign11.c | 255 int *prevwarpi = NULL; in L__align11() local 313 prevwarpi = AllocateIntVec( lgth2+1 ); in L__align11() 317 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in L__align11() 596 fpenalty_tmp = fpenalty_shift + fpenalty_ex * ( i - prevwarpi[j-1] + j - prevwarpj[j-1] ); in L__align11() 604 if( warpn && prevwarpi[j-1] == warpis[warpn-1] && prevwarpj[j-1] == warpjs[warpn-1] ) in L__align11() 613 warpis[warpn] = prevwarpi[j-1]; in L__align11() 685 intncpy( prevwarpi, warpi, lastj ); in L__align11() 698 free( prevwarpi ); in L__align11()
|
H A D | partSalignmm.c | 1015 int *prevwarpi = NULL; in partA__align() local 1127 prevwarpi = AllocateIntVec( lgth2+1 ); in partA__align() 1131 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in partA__align() 1532 warpis[warpn] = prevwarpi[j-1]; in partA__align() 1577 intncpy( prevwarpi, warpi, lastj ); in partA__align() 1589 free( prevwarpi ); in partA__align() 1703 int *prevwarpi = NULL; in partA__align_variousdist() local 1839 prevwarpi = AllocateIntVec( lgth2+1 ); in partA__align_variousdist() 2268 warpis[warpn] = prevwarpi[j-1]; in partA__align_variousdist() 2314 intncpy( prevwarpi, warpi, lastj ); in partA__align_variousdist() [all …]
|
H A D | Salignmm.c | 1074 int *prevwarpi = NULL; in A__align() local 1189 prevwarpi = AllocateIntVec( lgth2+1 ); in A__align() 1193 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in A__align() 1657 warpis[warpn] = prevwarpi[j-1]; in A__align() 1702 intncpy( prevwarpi, warpi, lastj ); in A__align() 1715 free( prevwarpi ); in A__align() 1841 int *prevwarpi = NULL; in A__align_variousdist() local 1982 prevwarpi = AllocateIntVec( lgth2+1 ); in A__align_variousdist() 2506 warpis[warpn] = prevwarpi[j-1]; in A__align_variousdist() 2551 intncpy( prevwarpi, warpi, lastj ); in A__align_variousdist() [all …]
|
H A D | Dalignmm.c | 2776 int *prevwarpi = NULL; in D__align() local 2915 prevwarpi = AllocateIntVec( lgth2+1 ); in D__align() 2919 for( i=0; i<lgth2+1; i++ ) prevwarpi[i] = -warpbase; in D__align() 4134 warpis[warpn] = prevwarpi[j-1]; in D__align() 4306 intncpy( prevwarpi, warpi, lastj ); in D__align() 4323 free( prevwarpi ); in D__align() 4612 int *prevwarpi = NULL; in D__align_variousdist() local 4785 prevwarpi = AllocateIntVec( lgth2+1 ); in D__align_variousdist() 6067 warpis[warpn] = prevwarpi[j-1]; in D__align_variousdist() 6239 intncpy( prevwarpi, warpi, lastj ); in D__align_variousdist() [all …]
|