Searched refs:pri_ratio (Results 1 – 8 of 8) sorted by relevance
/dports/biology/minimap2/minimap2-2.24/ |
H A D | options.c | 42 opt->pri_ratio = 0.8f; in mm_mapopt_init() 97 mo->min_chain_score = 100, mo->pri_ratio = 0.0f, mo->max_chain_skip = 25; in mm_set_opt() 105 mo->min_chain_score = 100, mo->pri_ratio = 0.0f, mo->max_chain_skip = 25; in mm_set_opt() 141 mo->pri_ratio = 0.5f; in mm_set_opt() 193 if (mo->pri_ratio < 0.0f || mo->pri_ratio > 1.0f) { in mm_check_opt()
|
H A D | pe.c | 6 void mm_select_sub_multi(void *km, float pri_ratio, float pri1, float pri2, int max_gap_ref, int mi… in mm_select_sub_multi() argument 8 if (pri_ratio > 0.0f && *n_ > 0) { in mm_select_sub_multi() 26 if (q->score >= p->score * pri_ratio) in mm_select_sub_multi()
|
H A D | mmpriv.h | 95 void mm_select_sub(void *km, float pri_ratio, int min_diff, int best_n, int check_strand, int min_s… 96 void mm_select_sub_multi(void *km, float pri_ratio, float pri1, float pri2, int max_gap_ref, int mi…
|
H A D | hit.c | 255 void mm_select_sub(void *km, float pri_ratio, int min_diff, int best_n, int check_strand, int min_s… in mm_select_sub() argument 257 if (pri_ratio > 0.0f && *n_ > 0) { in mm_select_sub() 263 …} else if ((r[i].score >= r[p].score * pri_ratio || r[i].score + min_diff >= r[p].score) && n_2nd … in mm_select_sub()
|
H A D | minimap.h | 146 float pri_ratio; member
|
H A D | main.c | 166 else if (c == 'p') opt.pri_ratio = atof(o.arg); in main() 337 fprintf(fp_help, " -p FLOAT min secondary-to-primary score ratio [%g]\n", opt.pri_ratio); in main()
|
H A D | map.c | 215 …if (n_segs <= 1) mm_select_sub(km, opt->pri_ratio, mi->k*2, opt->best_n, 1, opt->max_gap * 0.8, n_… in chain_post() 216 …else mm_select_sub_multi(km, opt->pri_ratio, 0.2f, 0.7f, max_chain_gap_ref, mi->k*2, opt->best_n, … in chain_post() 226 mm_select_sub(km, opt->pri_ratio, mi->k*2, opt->best_n, 0, opt->max_gap * 0.8, n_regs, regs); in align_regs() 514 …mm_select_sub(km, opt->pri_ratio, s->p->mi->k*2, opt->best_n, 0, opt->max_gap * 0.8, &s->n_reg[k],… in merge_hits()
|
/dports/biology/minimap2/minimap2-2.24/python/ |
H A D | cmappy.pxd | 33 float pri_ratio
|