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Searched refs:pri_ratio (Results 1 – 8 of 8) sorted by relevance

/dports/biology/minimap2/minimap2-2.24/
H A Doptions.c42 opt->pri_ratio = 0.8f; in mm_mapopt_init()
97 mo->min_chain_score = 100, mo->pri_ratio = 0.0f, mo->max_chain_skip = 25; in mm_set_opt()
105 mo->min_chain_score = 100, mo->pri_ratio = 0.0f, mo->max_chain_skip = 25; in mm_set_opt()
141 mo->pri_ratio = 0.5f; in mm_set_opt()
193 if (mo->pri_ratio < 0.0f || mo->pri_ratio > 1.0f) { in mm_check_opt()
H A Dpe.c6 void mm_select_sub_multi(void *km, float pri_ratio, float pri1, float pri2, int max_gap_ref, int mi… in mm_select_sub_multi() argument
8 if (pri_ratio > 0.0f && *n_ > 0) { in mm_select_sub_multi()
26 if (q->score >= p->score * pri_ratio) in mm_select_sub_multi()
H A Dmmpriv.h95 void mm_select_sub(void *km, float pri_ratio, int min_diff, int best_n, int check_strand, int min_s…
96 void mm_select_sub_multi(void *km, float pri_ratio, float pri1, float pri2, int max_gap_ref, int mi…
H A Dhit.c255 void mm_select_sub(void *km, float pri_ratio, int min_diff, int best_n, int check_strand, int min_s… in mm_select_sub() argument
257 if (pri_ratio > 0.0f && *n_ > 0) { in mm_select_sub()
263 …} else if ((r[i].score >= r[p].score * pri_ratio || r[i].score + min_diff >= r[p].score) && n_2nd … in mm_select_sub()
H A Dminimap.h146 float pri_ratio; member
H A Dmain.c166 else if (c == 'p') opt.pri_ratio = atof(o.arg); in main()
337 fprintf(fp_help, " -p FLOAT min secondary-to-primary score ratio [%g]\n", opt.pri_ratio); in main()
H A Dmap.c215 …if (n_segs <= 1) mm_select_sub(km, opt->pri_ratio, mi->k*2, opt->best_n, 1, opt->max_gap * 0.8, n_… in chain_post()
216 …else mm_select_sub_multi(km, opt->pri_ratio, 0.2f, 0.7f, max_chain_gap_ref, mi->k*2, opt->best_n, … in chain_post()
226 mm_select_sub(km, opt->pri_ratio, mi->k*2, opt->best_n, 0, opt->max_gap * 0.8, n_regs, regs); in align_regs()
514 …mm_select_sub(km, opt->pri_ratio, s->p->mi->k*2, opt->best_n, 0, opt->max_gap * 0.8, &s->n_reg[k],… in merge_hits()
/dports/biology/minimap2/minimap2-2.24/python/
H A Dcmappy.pxd33 float pri_ratio