Searched refs:probC (Results 1 – 6 of 6) sorted by relevance
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Matrix/PSM/ |
H A D | SiteMatrix.pm | 239 $self->{probC} = $input{pC}; 248 $self->{probC} = [split(//,$input{pC})]; 259 if (${$self->{probC}}[$i] and ${$self->{probC}}[$i] eq 'a') { 260 ${$self->{probC}}[$i]='10'; 282 ${$self->{probC}}[$i] += $self->{correction}; 290 ${$self->{probC}}[$i]=${$self->{probC}}[$i]/$div; 343 $model{probC}=$model->{C}; 380 my $pC=${$self->{probC}}[$pos]; 665 if ($base eq 'C') {@prob= @{$self->{probC}}; last BASE; } 694 return @{$self->{probC}} if ($base eq 'C'); [all …]
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H A D | Psm.pm | 232 -pC=>$self->{probC}, 246 $self->{probC}=$matrix->{probC};
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H A D | ProtMatrix.pm | 747 @prob = @{$self->{probC}} unless (!defined($self->{probC}));
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/dports/biology/bbmap/bbmap/current/jgi/ |
H A D | BBMergeOverlapper.java | 699 float probC=probCorrect4[qa]*probCorrect4[qb]; in expectedMismatches() local 700 float probE=1-probC; in expectedMismatches() 703 actual+=(ca==cb ? 0 : probC); in expectedMismatches() 748 float probC=probCorrect4[qa]*probCorrect4[qb]; in probability() local 749 float probM=probC+(1-probC)*0.25f; //probability of matching in probability() 752 assert(probM>0) : qa+", "+qb+", "+probC+", "+probM+", "+probE; in probability() 753 assert(probE>0) : qa+", "+qb+", "+probC+", "+probM+", "+probE; in probability()
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/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/ |
H A D | SCFFormat.cpp | 515 static uchar getMaxProb(uchar probA, uchar probC, uchar probG, uchar probT) { in getMaxProb() argument 516 if (probA > probC && probA > probG && probA > probT) { in getMaxProb() 518 } else if (probC > probA && probC > probG && probC > probT) { in getMaxProb() 519 return probC; in getMaxProb() 520 } else if (probG > probA && probG > probC && probG > probT) { in getMaxProb() 522 } else if (probT > probA && probT > probC && probT > probG) { in getMaxProb()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/ |
H A D | ajseqread.c | 10646 unsigned char *probC = NULL; in seqReadScf() local 10788 AJCNEW(probC, seqlen); in seqReadScf() 10793 ajReadbinBinary(infile, seqlen, 1, probC); in seqReadScf() 10810 iqual = probC[i]; in seqReadScf()
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