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Searched refs:probC (Results 1 – 6 of 6) sorted by relevance

/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Matrix/PSM/
H A DSiteMatrix.pm239 $self->{probC} = $input{pC};
248 $self->{probC} = [split(//,$input{pC})];
259 if (${$self->{probC}}[$i] and ${$self->{probC}}[$i] eq 'a') {
260 ${$self->{probC}}[$i]='10';
282 ${$self->{probC}}[$i] += $self->{correction};
290 ${$self->{probC}}[$i]=${$self->{probC}}[$i]/$div;
343 $model{probC}=$model->{C};
380 my $pC=${$self->{probC}}[$pos];
665 if ($base eq 'C') {@prob= @{$self->{probC}}; last BASE; }
694 return @{$self->{probC}} if ($base eq 'C');
[all …]
H A DPsm.pm232 -pC=>$self->{probC},
246 $self->{probC}=$matrix->{probC};
H A DProtMatrix.pm747 @prob = @{$self->{probC}} unless (!defined($self->{probC}));
/dports/biology/bbmap/bbmap/current/jgi/
H A DBBMergeOverlapper.java699 float probC=probCorrect4[qa]*probCorrect4[qb]; in expectedMismatches() local
700 float probE=1-probC; in expectedMismatches()
703 actual+=(ca==cb ? 0 : probC); in expectedMismatches()
748 float probC=probCorrect4[qa]*probCorrect4[qb]; in probability() local
749 float probM=probC+(1-probC)*0.25f; //probability of matching in probability()
752 assert(probM>0) : qa+", "+qb+", "+probC+", "+probM+", "+probE; in probability()
753 assert(probE>0) : qa+", "+qb+", "+probC+", "+probM+", "+probE; in probability()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/
H A DSCFFormat.cpp515 static uchar getMaxProb(uchar probA, uchar probC, uchar probG, uchar probT) { in getMaxProb() argument
516 if (probA > probC && probA > probG && probA > probT) { in getMaxProb()
518 } else if (probC > probA && probC > probG && probC > probT) { in getMaxProb()
519 return probC; in getMaxProb()
520 } else if (probG > probA && probG > probC && probG > probT) { in getMaxProb()
522 } else if (probT > probA && probT > probC && probT > probG) { in getMaxProb()
/dports/biology/emboss/EMBOSS-6.6.0/ajax/core/
H A Dajseqread.c10646 unsigned char *probC = NULL; in seqReadScf() local
10788 AJCNEW(probC, seqlen); in seqReadScf()
10793 ajReadbinBinary(infile, seqlen, 1, probC); in seqReadScf()
10810 iqual = probC[i]; in seqReadScf()