Searched refs:prot_acc (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/gatk/gatk-4.2.0.0/scripts/funcotator/data_sources/ |
| H A D | getGencodeXRefseq.sh | 21 SELECT mrna.transcript_id as transcript_id, mRNA_id, prot_acc FROM
34 …AT(transcript.stable_id, '.', transcript.version) AS transcript_id, xref.display_label AS prot_acc
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| /dports/science/gromacs/gromacs-2021.4/src/gromacs/gmxpreprocess/ |
| H A D | hizzie.cpp | 176 static const char* prot_acc[] = { "O", "OD1", "OD2", "OE1", "OE2", "OG", "OG1", "OH", "OW" }; in set_histp() local
177 #define NPA asize(prot_acc) in set_histp()
218 if (in_strings(*pdba->atomname[j], NPA, prot_acc) != -1) in set_histp()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
| H A D | feature_item.cpp | 2794 string prot_acc; in x_AddQualProteinId() local
2801 prot_acc = GetAccessionForGi( gi, ctx.GetScope() ); in x_AddQualProteinId()
2808 prot_acc = protId->GetSeqIdString(true); in x_AddQualProteinId()
2826 if( ! prot_acc.empty() ) { in x_AddQualProteinId()
2827 if ( ! ctx.Config().DropIllegalQuals() || IsValidAccession( prot_acc ) ) { in x_AddQualProteinId()
2829 CRef<CSeq_id> acc_id( new CSeq_id( prot_acc ) ); in x_AddQualProteinId()
2832 x_AddQual( eFQ_protein_id, new CFlatStringQVal(prot_acc) ); in x_AddQualProteinId()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
| H A D | feature_item.cpp | 2794 string prot_acc; in x_AddQualProteinId() local
2801 prot_acc = GetAccessionForGi( gi, ctx.GetScope() ); in x_AddQualProteinId()
2808 prot_acc = protId->GetSeqIdString(true); in x_AddQualProteinId()
2826 if( ! prot_acc.empty() ) { in x_AddQualProteinId()
2827 if ( ! ctx.Config().DropIllegalQuals() || IsValidAccession( prot_acc ) ) { in x_AddQualProteinId()
2829 CRef<CSeq_id> acc_id( new CSeq_id( prot_acc ) ); in x_AddQualProteinId()
2832 x_AddQual( eFQ_protein_id, new CFlatStringQVal(prot_acc) ); in x_AddQualProteinId()
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| /dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/PerlLib/ |
| H A D | Gene_obj.pm | 177 prot_acc => undef, #text
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