Searched refs:prot_to_cds (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/format/ |
| H A D | gather_items.cpp | 4332 CSeq_loc_Mapper prot_to_cds(feat, CSeq_loc_Mapper::eProductToLocation, &scope); in x_GetFeatsOnCdsProductIdx() local
4333 prot_to_cds.SetFuzzOption( CSeq_loc_Mapper::fFuzzOption_CStyle ); in x_GetFeatsOnCdsProductIdx()
4369 CRef<CSeq_loc> loc(prot_to_cds.Map(curr_loc)); in x_GetFeatsOnCdsProductIdx()
4456 CSeq_loc_Mapper prot_to_cds(feat, CSeq_loc_Mapper::eProductToLocation, &scope); in x_GetFeatsOnCdsProduct() local
4457 prot_to_cds.SetFuzzOption( CSeq_loc_Mapper::fFuzzOption_CStyle ); in x_GetFeatsOnCdsProduct()
4482 CRef<CSeq_loc> loc(prot_to_cds.Map(curr_loc)); in x_GetFeatsOnCdsProduct()
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/format/ |
| H A D | gather_items.cpp | 4330 CSeq_loc_Mapper prot_to_cds(feat, CSeq_loc_Mapper::eProductToLocation, &scope); in x_GetFeatsOnCdsProductIdx() local
4331 prot_to_cds.SetFuzzOption( CSeq_loc_Mapper::fFuzzOption_CStyle ); in x_GetFeatsOnCdsProductIdx()
4367 CRef<CSeq_loc> loc(prot_to_cds.Map(curr_loc)); in x_GetFeatsOnCdsProductIdx()
4454 CSeq_loc_Mapper prot_to_cds(feat, CSeq_loc_Mapper::eProductToLocation, &scope); in x_GetFeatsOnCdsProduct() local
4455 prot_to_cds.SetFuzzOption( CSeq_loc_Mapper::fFuzzOption_CStyle ); in x_GetFeatsOnCdsProduct()
4480 CRef<CSeq_loc> loc(prot_to_cds.Map(curr_loc)); in x_GetFeatsOnCdsProduct()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | cdregion_validator.cpp | 1253 CSeq_loc_Mapper prot_to_cds(m_Feat, CSeq_loc_Mapper::eProductToLocation, &m_Scope); in x_ValidateCDSPeptides() local
1287 CRef<CSeq_loc> nloc(prot_to_cds.Map(loc)); in x_ValidateCDSPeptides()
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/ |
| H A D | gff3_writer.cpp | 2827 CSeq_loc_Mapper prot_to_cds(cds.GetOriginalFeature(), in xWriteFeatureProtein() local
2829 prot_to_cds.SetFuzzOption(CSeq_loc_Mapper::fFuzzOption_CStyle); in xWriteFeatureProtein()
2830 CRef<CSeq_loc> pMappedLoc(prot_to_cds.Map(protein.GetLocation())); in xWriteFeatureProtein()
|