| /dports/biology/plink/plink-ng-79b2df8c/1.9/ |
| H A D | plink_ld.h | 152 …f, double* sorted_chisq_buf, uint32_t* sorted_marker_idx_buf, uint32_t* proxy_arr, uint32_t* raw_s…
156 …s, double* sorted_chisq_buf, uint32_t* sorted_marker_idx_buf, uint32_t* proxy_arr, uint32_t** setd…
158 …ouble* orig_stats, double* sorted_chisq_buf, uint32_t* sorted_marker_idx_buf, uint32_t* proxy_arr);
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| H A D | plink_common.c | 5413 … const void*), char* secondary_arr, uintptr_t secondary_item_len, char* proxy_arr, uintptr_t proxy… in qsort_ext2() argument
5416 *(char**)(&(proxy_arr[ulii * proxy_len])) = &(main_arr[ulii * item_length]); in qsort_ext2()
5417 …memcpy(&(proxy_arr[ulii * proxy_len + sizeof(void*)]), &(secondary_arr[ulii * secondary_item_len])… in qsort_ext2()
5419 qsort(proxy_arr, arr_length, proxy_len, comparator_deref); in qsort_ext2()
5421 …memcpy(&(secondary_arr[ulii * secondary_item_len]), &(proxy_arr[ulii * proxy_len + sizeof(void*)])… in qsort_ext2()
5422 memcpy(&(proxy_arr[ulii * proxy_len]), *(char**)(&(proxy_arr[ulii * proxy_len])), item_length); in qsort_ext2()
5425 memcpy(&(main_arr[ulii * item_length]), &(proxy_arr[ulii * proxy_len]), item_length); in qsort_ext2()
5447 char* proxy_arr; in qsort_ext() local
5454 if (bigstack_alloc_c(arr_length * proxy_len, &proxy_arr)) { in qsort_ext()
5457 …rr_length, item_length, comparator_deref, secondary_arr, secondary_item_len, proxy_arr, proxy_len); in qsort_ext()
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| H A D | plink_glm.c | 4071 uint32_t* proxy_arr = nullptr; in glm_linear_assoc_set_test() local
4128 …hreshold, &orig_set_scores, &sorted_chisq_buf, &sorted_marker_idx_buf, &proxy_arr, &perm_adapt_set… in glm_linear_assoc_set_test()
4318 …chisq_pmajor, orig_set_scores, sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr, setdefs, ld_map… in glm_linear_assoc_set_test()
4345 …er, output_min_p, chisq_threshold, orig_stats, sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr); in glm_linear_assoc_set_test()
5629 uint32_t* proxy_arr = nullptr; in glm_logistic_assoc_set_test() local
5680 …hreshold, &orig_set_scores, &sorted_chisq_buf, &sorted_marker_idx_buf, &proxy_arr, &perm_adapt_set… in glm_logistic_assoc_set_test()
5852 …chisq_pmajor, orig_set_scores, sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr, setdefs, ld_map… in glm_logistic_assoc_set_test()
5879 …er, output_min_p, chisq_threshold, orig_stats, sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr); in glm_logistic_assoc_set_test()
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| H A D | plink_ld.c | 12232 …f, double* sorted_chisq_buf, uint32_t* sorted_marker_idx_buf, uint32_t* proxy_arr, uint32_t* raw_s… in set_test_score() argument
12264 …double_cmp_deref, (char*)sorted_marker_idx_buf, sizeof(int32_t), (char*)proxy_arr, sizeof(double) … in set_test_score()
12271 if (in_setdef(ld_map[proxy_arr[uii]], marker_idx)) { in set_test_score()
12277 proxy_arr[final_sig_ct] = marker_idx; in set_test_score()
12474 …s, double* sorted_chisq_buf, uint32_t* sorted_marker_idx_buf, uint32_t* proxy_arr, uint32_t** setd… in compute_set_scores() argument
12493 …t]), ld_map, setdefs[set_idx], sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr, nullptr, nullpt… in compute_set_scores()
12517 …uble* orig_stats, double* sorted_chisq_buf, uint32_t* sorted_marker_idx_buf, uint32_t* proxy_arr) { in write_set_test_results() argument
12553 …ats, ld_map, setdefs[set_idx], sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr, &raw_sig_ct, &f… in write_set_test_results()
12571 fputs(&(marker_ids[marker_idx_to_uidx[proxy_arr[0]] * max_marker_id_len]), outfile); in write_set_test_results()
12574 fputs(&(marker_ids[marker_idx_to_uidx[proxy_arr[uii]] * max_marker_id_len]), outfile); in write_set_test_results()
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| H A D | plink_assoc.c | 5631 uint32_t* proxy_arr = nullptr; in model_assoc_set_test() local
5693 …hreshold, &orig_set_scores, &sorted_chisq_buf, &sorted_marker_idx_buf, &proxy_arr, &perm_adapt_set… in model_assoc_set_test()
5908 …chisq_pmajor, orig_set_scores, sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr, setdefs, ld_map… in model_assoc_set_test()
5937 …er, output_min_p, chisq_threshold, orig_chisq, sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr); in model_assoc_set_test()
7792 uint32_t* proxy_arr = nullptr; in qassoc_set_test() local
7851 …hreshold, &orig_set_scores, &sorted_chisq_buf, &sorted_marker_idx_buf, &proxy_arr, &perm_adapt_set… in qassoc_set_test()
8042 …chisq_pmajor, orig_set_scores, sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr, setdefs, ld_map… in qassoc_set_test()
8069 …er, output_min_p, chisq_threshold, orig_stats, sorted_chisq_buf, sorted_marker_idx_buf, proxy_arr); in qassoc_set_test()
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| H A D | plink_common.h | 2412 … const void*), char* secondary_arr, uintptr_t secondary_item_len, char* proxy_arr, uintptr_t proxy…
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