/dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
H A D | fuzztran.c | 50 AjPSeq pseq = NULL; in main() local 97 pseq = ajSeqNewNameS(pro, ajSeqGetNameS(seq)); in main() 101 ajSeqDel(&pseq); in main() 110 ajSeqDel(&pseq); in main() 119 ajSeqDel(&pseq); in main() 130 ajSeqDel(&pseq); in main() 139 ajSeqDel(&pseq); in main() 148 ajSeqDel(&pseq); in main() 160 ajSeqDel(&pseq); in main() 178 ajSeqDel(&pseq); in main() [all …]
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H A D | tranalign.c | 29 const AjPSeq nseq, const AjPSeq pseq, 47 const AjPSeq pseq; /* next protein sequence use in alignment */ in main() local 83 if((pseq = ajSeqsetGetseqSeq(protseq, proteinseqcount++)) == NULL) in main() 89 ajSeqGetNameS(nseq), ajSeqGetNameS(pseq)); in main() 92 ajStrAssignS(°apstr, ajSeqGetSeqS(pseq)); in main() 158 ajSeqGetNameS(pseq), ajSeqGetNameS(nseq)); in main() 167 tranalign_AddGaps(newseq, nseq, pseq, (pos*3)+frame-1); in main() 214 const AjPSeq nseq, const AjPSeq pseq, in tranalign_AddGaps() argument 223 for(; ppos<ajSeqGetLen(pseq); ppos++) in tranalign_AddGaps() 224 if(ajSeqGetSeqC(pseq)[ppos] == '-') in tranalign_AddGaps() local
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/dports/databases/grass7/grass-7.8.6/lib/vector/Vlib/ |
H A D | geos.c | 137 GEOSCoordSequence *pseq; in Vect_line_to_geos() local 166 geom = GEOSGeom_createPoint(pseq); in Vect_line_to_geos() 201 GEOSCoordSequence *pseq; in Vect__read_line_geos() local 204 if (!pseq) in Vect__read_line_geos() 209 geom = GEOSGeom_createPoint(pseq); in Vect__read_line_geos() 288 GEOSCoordSequence *pseq; in V1_read_line_geos() local 371 GEOSCoordSeq_setX(pseq, i, x[i]); in V1_read_line_geos() 384 return pseq; in V1_read_line_geos() 471 if (!(pseq[i])) { in read_polygon_points() 513 GEOSCoordSeq_destroy(pseq[i]); in read_polygon_points() [all …]
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SeqIO/ |
H A D | largefasta.t | 21 my $pseq = $seqio->next_seq(); 22 $pseq->alphabet('dna'); 23 $pseq->desc('this is my description');; 24 my $plength = $pseq->length(); 27 is defined $pseq, 1; 29 is length($pseq->subseq(100, 299)), 200; 31 is $pseq->alphabet(), 'dna'; 32 is $pseq->display_id(), 'HSBA536C5'; 33 is $pseq->accession_number(), 'unknown'; 42 is $seqout->write_seq($pseq), 1; [all …]
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/dports/biology/viennarna/ViennaRNA-2.4.18/interfaces/Perl/RNA/ |
H A D | Design.pm | 596 my @pseq=(); 615 @pseq = $self->update_constraint($cycle, @pseq); 629 substr($con, $path->[$_], 1, $pseq[$_]) for (0 .. $#pseq); 666 for $i (-$#pseq .. $#pseq-1) { 670 for $i (reverse(-$#pseq .. $#pseq)) { 687 return @pseq; 704 my @pseq = @_; 847 @pseq = $self->make_pathseq($cycle, @pseq); 849 substr($seq, $$path[$_], 1, $pseq[$_]) for (0 .. $#pseq); 945 @pseq = $self->make_pathseq($cycle, @pseq); [all …]
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Seq/ |
H A D | LargePSeq.t | 19 my $pseq = Bio::Seq::LargePrimarySeq->new(); 20 ok $pseq; 24 is $pseq->display_id('hello'), 'hello'; 26 is $pseq->seq, 'ATGGGGTGGGGTGAAACCCTTTGGGGGTGGGGTAAATGTTTGGGGTTAAACCCCTTTGGGGGGT' , "Sequence is " … 28 is $pseq->subseq(3,7), 'GGGGT', "Subseq is ".$pseq->subseq(3,7); 31 is($pseq->subseq($location), 'GGGTG'); 49 is( $pseq->subseq($fuzzy), 'GGTGAAACC'); 52 is($pseq->trunc(8,15)->seq, 'GGGGTGAA', 53 'trunc seq was ' . $pseq->trunc(8,15)->seq); 57 is $pseq->translate()->seq, 'MGWGETLWGWGKCLGLNPFGG'; [all …]
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/dports/games/d2x/d2x-0.2.5/unused/win95/ |
H A D | midiseq.h | 87 PSEQ pseq); 90 PSEQ pseq); 93 PSEQ pseq); 96 PSEQ pseq); 99 PSEQ pseq, 103 PSEQ pseq); 106 PSEQ pseq); 109 PSEQ pseq); 115 PSEQ pseq, 119 PSEQ pseq, [all …]
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/dports/math/hs-Agda/Agda-2.6.2/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/finance/hs-hledger-ui/hledger-ui-1.19/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/devel/hs-git-brunch/git-brunch-1.5.1.0/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/devel/hs-haskell-language-server/haskell-language-server-1.4.0/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/security/hs-cryptol/cryptol-2.11.0/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/www/hs-postgrest/postgrest-8.0.0/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/www/hs-DAV/DAV-1.3.4/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/devel/hs-git-annex/git-annex-8.20210903/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/net-im/matterhorn/matterhorn-50200.13.0/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/misc/hs-hascard/hascard-0.3.0.1/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/lang/purescript/purescript-0.14.5/_cabal_deps/parallel-3.2.2.0/Control/ |
H A D | Parallel.hs | 18 par, pseq 22 import qualified GHC.Conc ( par, pseq ) 24 infixr 0 `par`, `pseq` 67 pseq :: a -> b -> b 69 pseq = GHC.Conc.pseq function 71 pseq = seq function
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/dports/graphics/geos/geos-3.9.1/tests/unit/geom/ |
H A D | LineStringTest.cpp | 98 pseq->add(Coordinate(0, 0, 0)); in test() 99 pseq->add(Coordinate(5, 5, 5)); in test() 100 pseq->add(Coordinate(10, 10, 10)); in test() 102 ensure_equals(pseq->size(), size3); in test() 143 CoordArrayPtr pseq = nullptr; in test() local 147 pseq->add(geos::geom::Coordinate(0, 0, 0)); in test() 148 ensure_equals(pseq->size(), 1u); in test() 178 pseq->add(Coordinate(0, 0, 0)); in test() 179 pseq->add(Coordinate(5, 5, 5)); in test() 180 pseq->add(Coordinate(10, 10, 10)); in test() [all …]
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/dports/games/kblocks/kblocks-21.12.3/src/AI/ |
H A D | KBlocksAIPlannerExtend.cpp | 85 pseq->push_back(piece); in getPath() 157 AIPlanner_PieceValue_Sequence pseq = AIPlanner_PieceValue_Sequence(0); in process() local 158 pseq.push_front(pieceValue); in process() 159 return process(pseq); in process() 163 int KBlocksAIPlannerExtend::process(const AIPlanner_PieceValue_Sequence &pseq) in process() argument 168 AIPlanner_PieceValue_Sequence tmpPSeq = AIPlanner_PieceValue_Sequence(pseq); in process() 174 AIPlanner_PieceValue_Sequence &pseq, in process_nstep_recursive() argument 178 if (pseq.size() == 0) { in process_nstep_recursive() 182 bool isLeaf = (pseq.size() == 1); in process_nstep_recursive() 184 KBlocks_PieceType_Detail first_piece_type = pseq.front(); in process_nstep_recursive() [all …]
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/dports/graphics/openjpeg15/openjpeg-version.1.5.2/thirdparty/liblcms2/src/ |
H A D | cmsnamed.c | 697 for (i=0; i < pseq ->n; i++) { in cmsFreeProfileSequenceDescription() 698 if (pseq ->seq[i].Manufacturer != NULL) cmsMLUfree(pseq ->seq[i].Manufacturer); in cmsFreeProfileSequenceDescription() 699 if (pseq ->seq[i].Model != NULL) cmsMLUfree(pseq ->seq[i].Model); in cmsFreeProfileSequenceDescription() 700 if (pseq ->seq[i].Description != NULL) cmsMLUfree(pseq ->seq[i].Description); in cmsFreeProfileSequenceDescription() 703 if (pseq ->seq != NULL) _cmsFree(pseq ->ContextID, pseq ->seq); in cmsFreeProfileSequenceDescription() 704 _cmsFree(pseq -> ContextID, pseq); in cmsFreeProfileSequenceDescription() 712 if (pseq == NULL) in cmsDupProfileSequenceDescription() 719 NewSeq -> seq = (cmsPSEQDESC*) _cmsCalloc(pseq ->ContextID, pseq ->n, sizeof(cmsPSEQDESC)); in cmsDupProfileSequenceDescription() 722 NewSeq -> ContextID = pseq ->ContextID; in cmsDupProfileSequenceDescription() 723 NewSeq -> n = pseq ->n; in cmsDupProfileSequenceDescription() [all …]
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/dports/textproc/fop/fop-2.6/fop-core/src/test/java/org/apache/fop/layoutmgr/ |
H A D | PageSequenceLayoutManagerTestCase.java | 76 final PageSequence pseq = mock(PageSequence.class); in testGetNextPage() local 81 when(pseq.getMainFlow()).thenReturn(flow); in testGetNextPage() 82 when(pseq.getRoot()).thenReturn(root); in testGetNextPage() 84 PageSequenceLayoutManager sut = new PageSequenceLayoutManager(ath, pseq) { in testGetNextPage() 123 final PageSequence pseq = mock(PageSequence.class); in testRegionNameNotFound() local 129 when(pseq.getRoot()).thenReturn(root); in testRegionNameNotFound() 130 when(pseq.hasPagePositionLast()).thenReturn(true); in testRegionNameNotFound() 131 when(pseq.getMainFlow()).thenReturn(flow); in testRegionNameNotFound() 133 … PageSequenceLayoutManager pageSequenceLayoutManager = new PageSequenceLayoutManager(ath, pseq) { in testRegionNameNotFound()
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/dports/audio/aacgain/aacgain-1.8/mpeg4ip/lib/mp4v2/test/ |
H A D | nullcreate.cpp | 64 static uint8_t pseq[] = { 0, 1, 2, 3, 4, 5, 6,7, 8, 9 }; in main() local 66 MP4AddH264SequenceParameterSet(mp4File, videoTrackId, pseq, 10); in main() 67 MP4AddH264SequenceParameterSet(mp4File, videoTrackId, pseq, 6); in main() 68 MP4AddH264PictureParameterSet(mp4File, videoTrackId, pseq, 7); in main() 69 MP4AddH264PictureParameterSet(mp4File, videoTrackId, pseq, 8); in main() 70 MP4AddH264PictureParameterSet(mp4File, videoTrackId, pseq, 7); in main()
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/dports/security/suricata/suricata-6.0.4/src/ |
H A D | stream-tcp-inline.c | 117 uint32_t pseq = TCP_GET_SEQ(p); in StreamTcpInlineSegmentReplacePacket() local 121 if (tseq + TCP_SEG_LEN(seg) < pseq) { in StreamTcpInlineSegmentReplacePacket() 123 } else if (pseq + p->payload_len < tseq) { in StreamTcpInlineSegmentReplacePacket() 131 uint32_t pend = pseq + p->payload_len; in StreamTcpInlineSegmentReplacePacket() 138 uint32_t seq = (SEQ_LT(pseq, tseq)) ? tseq : pseq; in StreamTcpInlineSegmentReplacePacket() 141 uint16_t poff = seq - pseq; in StreamTcpInlineSegmentReplacePacket()
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/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/src/java.desktop/share/native/liblcms/ |
H A D | cmsnamed.c | 834 for (i=0; i < pseq ->n; i++) { in cmsFreeProfileSequenceDescription() 835 if (pseq ->seq[i].Manufacturer != NULL) cmsMLUfree(pseq ->seq[i].Manufacturer); in cmsFreeProfileSequenceDescription() 836 if (pseq ->seq[i].Model != NULL) cmsMLUfree(pseq ->seq[i].Model); in cmsFreeProfileSequenceDescription() 837 if (pseq ->seq[i].Description != NULL) cmsMLUfree(pseq ->seq[i].Description); in cmsFreeProfileSequenceDescription() 840 if (pseq ->seq != NULL) _cmsFree(pseq ->ContextID, pseq ->seq); in cmsFreeProfileSequenceDescription() 841 _cmsFree(pseq -> ContextID, pseq); in cmsFreeProfileSequenceDescription() 849 if (pseq == NULL) in cmsDupProfileSequenceDescription() 856 NewSeq -> seq = (cmsPSEQDESC*) _cmsCalloc(pseq ->ContextID, pseq ->n, sizeof(cmsPSEQDESC)); in cmsDupProfileSequenceDescription() 859 NewSeq -> ContextID = pseq ->ContextID; in cmsDupProfileSequenceDescription() 860 NewSeq -> n = pseq ->n; in cmsDupProfileSequenceDescription() [all …]
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