Searched refs:pseudoWeight (Results 1 – 10 of 10) sorted by relevance
119 AlpsParameter(AlpsDoublePar, pseudoWeight))); in createKeywordList()179 setEntry(pseudoWeight, 1.0); in setDefaultEntries()
116 pseudoWeight, enumerator
724 double weight = BlisPar_->entry(BlisParams::pseudoWeight); in findIntegers()
181 AlpsParameter(AlpsDoublePar, pseudoWeight))); in createKeywordList()280 setEntry(pseudoWeight, 0.8); in setDefaultEntries()
170 pseudoWeight, enumerator
2101 double pseudoWeight; /*multiplier for pseudocounts term*/ local2116 pseudoWeight = kZeroObsPseudo;2120 pseudoWeight = columnCounts;2137 const double kBeta = pseudoWeight;2218 double pseudoWeight; /*multiplier for pseudocounts term*/ local2234 pseudoWeight = kZeroObsPseudo;2238 pseudoWeight = columnCounts;2255 const double kBeta = pseudoWeight;
1846 double pseudoWeight; /*multiplier for pseudocounts term*/ in posComputePseudoFreqs() local1880 pseudoWeight = ZERO_OBS_PSEUDO; in posComputePseudoFreqs()1884 pseudoWeight = columnCounts; in posComputePseudoFreqs()1886 posSearch->pseudoWeights[c] = pseudoWeight; in posComputePseudoFreqs()1895 pseudo *= pseudoWeight; in posComputePseudoFreqs()1899 denominator = observations + pseudoWeight; in posComputePseudoFreqs()
835 double pseudoWeight = 0.0; /* The weight of pseudocounts to avoid artificial long branches when variable1808 pseudoWeight = atof(argv[iArg]); in main()1809 if (pseudoWeight < 0.0) { in main()1814 pseudoWeight = 1.0; in main()2017 if (pseudoWeight > 0) in main()2018 …fprintf(fp, "Pseudocount weight for comparing sequences with little overlap: %.3lf\n",pseudoWeight… in main()4036 if (pseudoWeight > 0) { in CorrectedPairDistances()4046 distances[iHit] = (distances[iHit] * hit[iHit].weight + prior * pseudoWeight) in CorrectedPairDistances()4047 / (hit[iHit].weight + pseudoWeight); in CorrectedPairDistances()