Searched refs:pysam_bam_get_cigar (Results 1 – 5 of 5) sorted by relevance
60 static inline uint32_t * pysam_bam_get_cigar(bam1_t * b) { in pysam_bam_get_cigar() function
28 uint32_t * pysam_bam_get_cigar(bam1_t * b)
15 uint32_t * pysam_bam_get_cigar(bam1_t * b)
448 cdef uint32_t * cigar_p = pysam_bam_get_cigar(src)478 cdef uint32_t * cigar_p = pysam_bam_get_cigar(src)506 cigar_p = pysam_bam_get_cigar(src);521 cdef uint32_t * cigar_p = pysam_bam_get_cigar(src)1780 cigar_p = pysam_bam_get_cigar(src)1920 cigar_p = pysam_bam_get_cigar(src)2008 cigar_p = pysam_bam_get_cigar(src)2041 cigar_p = pysam_bam_get_cigar(src)2183 cigar_p = pysam_bam_get_cigar(src);2201 p = pysam_bam_get_cigar(src)[all …]
8687 __pyx_v_cigar_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_f_5pysam_18libcalignedsegment_calculateQueryLengthWithoutHardClipping()8901 __pyx_v_cigar_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_f_5pysam_18libcalignedsegment_calculateQueryLengthWithHardClipping()9139 __pyx_v_cigar_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_f_5pysam_18libcalignedsegment_getQueryStart()9326 __pyx_v_cigar_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_f_5pysam_18libcalignedsegment_getQueryEnd()11016 __pyx_v_cigar_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_f_5pysam_18libcalignedsegment_build_alignment_sequence()12272 __pyx_v_cigar_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_f_5pysam_18libcalignedsegment_build_reference_sequence()22231 __pyx_v_cigar_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_pf_5pysam_18libcalignedsegment_14AlignedSegment_26get_reference_positions()23442 __pyx_v_cigar_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_pf_5pysam_18libcalignedsegment_14AlignedSegment_38get_aligned_pairs()24303 __pyx_v_cigar_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_pf_5pysam_18libcalignedsegment_14AlignedSegment_40get_blocks()25626 __pyx_v_p = pysam_bam_get_cigar(__pyx_v_src); in __pyx_pf_5pysam_18libcalignedsegment_14AlignedSegment_11cigartuples_2__set__()[all …]