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/dports/biology/bbmap/bbmap/current/hiseq/
H A DAnalyzeFlowCell.java169 qDeviations=uDeviations=eDeviations=gDeviations=Float.parseFloat(b); in parse()
171 qDeviations=Float.parseFloat(b); in parse()
775 if(qual<avgQuality-qDeviations*stdQuality){return false;} in processReadPair_inner()
783 if(qual<avgQuality-qDeviations*stdQuality){return false;} in processReadPair_inner()
875 if(dq>qDeviations*stdQuality && dq>avgQuality*qualFraction && dq>qualAbs){ in markTiles()
1007 private float qDeviations=2f; field in AnalyzeFlowCell