Searched refs:q_off_t (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | link_hsps.c | 663 Int4 q_off_t = H->q_offset_trim; in s_BlastEvenGapLinkHSPs() local
665 lh_helper[H_index].q_off_trim = q_off_t; in s_BlastEvenGapLinkHSPs()
713 Int4 q_off_t,s_off_t,sum; in s_BlastEvenGapLinkHSPs() local
716 q_off_t = lh_helper[H2_index].q_off_trim; in s_BlastEvenGapLinkHSPs()
720 b1 = q_off_t <= H_query_etrim; in s_BlastEvenGapLinkHSPs()
725 b4 = ( q_off_t > H_q_et_gap ) ; in s_BlastEvenGapLinkHSPs()
733 if(q_off_t > (H_q_et_gap+trim_size)) in s_BlastEvenGapLinkHSPs()
830 Int4 q_off_t,s_off_t,sum,next_larger; in s_BlastEvenGapLinkHSPs() local
836 q_off_t = H2_helper->q_off_trim; in s_BlastEvenGapLinkHSPs()
847 b1 = q_off_t <= H_query_etrim; in s_BlastEvenGapLinkHSPs()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | link_hsps.c | 663 Int4 q_off_t = H->q_offset_trim; in s_BlastEvenGapLinkHSPs() local
665 lh_helper[H_index].q_off_trim = q_off_t; in s_BlastEvenGapLinkHSPs()
713 Int4 q_off_t,s_off_t,sum; in s_BlastEvenGapLinkHSPs() local
716 q_off_t = lh_helper[H2_index].q_off_trim; in s_BlastEvenGapLinkHSPs()
720 b1 = q_off_t <= H_query_etrim; in s_BlastEvenGapLinkHSPs()
725 b4 = ( q_off_t > H_q_et_gap ) ; in s_BlastEvenGapLinkHSPs()
733 if(q_off_t > (H_q_et_gap+trim_size)) in s_BlastEvenGapLinkHSPs()
830 Int4 q_off_t,s_off_t,sum,next_larger; in s_BlastEvenGapLinkHSPs() local
836 q_off_t = H2_helper->q_off_trim; in s_BlastEvenGapLinkHSPs()
847 b1 = q_off_t <= H_query_etrim; in s_BlastEvenGapLinkHSPs()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | link_hsps.c | 663 Int4 q_off_t = H->q_offset_trim; in s_BlastEvenGapLinkHSPs() local
665 lh_helper[H_index].q_off_trim = q_off_t; in s_BlastEvenGapLinkHSPs()
713 Int4 q_off_t,s_off_t,sum; in s_BlastEvenGapLinkHSPs() local
716 q_off_t = lh_helper[H2_index].q_off_trim; in s_BlastEvenGapLinkHSPs()
720 b1 = q_off_t <= H_query_etrim; in s_BlastEvenGapLinkHSPs()
725 b4 = ( q_off_t > H_q_et_gap ) ; in s_BlastEvenGapLinkHSPs()
733 if(q_off_t > (H_q_et_gap+trim_size)) in s_BlastEvenGapLinkHSPs()
830 Int4 q_off_t,s_off_t,sum,next_larger; in s_BlastEvenGapLinkHSPs() local
836 q_off_t = H2_helper->q_off_trim; in s_BlastEvenGapLinkHSPs()
847 b1 = q_off_t <= H_query_etrim; in s_BlastEvenGapLinkHSPs()
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | blast.c | 11513 Int4 q_off_t = H->query.offset_trim; in link_hsps() local
11515 lh_helper[H_index].q_off_trim = q_off_t; in link_hsps()
11566 Int4 q_off_t,s_off_t,sum; in link_hsps() local
11569 q_off_t = lh_helper[H2_index].q_off_trim; in link_hsps()
11573 b1 = q_off_t <= H_query_etrim; in link_hsps()
11579 b4 = ( q_off_t > H_q_et_gap ) ; in link_hsps()
11587 if(q_off_t > (H_q_et_gap+max_q_diff)) in link_hsps()
11688 Int4 q_off_t,s_off_t,sum,next_larger; in link_hsps() local
11694 q_off_t = H2_helper->q_off_trim; in link_hsps()
11705 b1 = q_off_t <= H_query_etrim; in link_hsps()
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