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Searched refs:qbt1 (Results 1 – 9 of 9) sorted by relevance

/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Dpart_func.c613 qbt1 = 0.; in postprocess_circular()
628 qm2[k] = qbt1; in postprocess_circular()
676 qbt1 = 0.; in postprocess_circular()
686 qbt1 += qot; in postprocess_circular()
689 qm2[k] = qbt1; in postprocess_circular()
707 qbt1 = 0.; in postprocess_circular()
739 qbt1 += qot; in postprocess_circular()
778 qbt1 += qot; in postprocess_circular()
791 qmo += qbt1; in postprocess_circular()
799 qbt1 = scale[n]; in postprocess_circular()
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H A Dboltzmann_sampling.c1289 qbt1 = 0.; in backtrack()
1368 qbt1 = 0.; in backtrack()
1379 qbt1 += (q_temp - fbds); in backtrack()
1381 qbt1 += q_temp; in backtrack()
1384 if (qbt1 >= r) { in backtrack()
1469 qbt1 += q_temp; in backtrack()
1472 if (qbt1 >= r) in backtrack()
1482 if (qbt1 >= r) in backtrack()
1556 qbt1 += q_temp - fbds; in backtrack()
1559 qbt1 += q_temp; in backtrack()
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H A Dpart_func_up.c245 double qbt1, *tmp, sum_l, *sum_M; in pf_unstru() local
378 qbt1 = qb[po] * in pf_unstru()
380 qqm[p] += qbt1; in pf_unstru()
490 qbt1 = qb[po]; in pf_unstru()
491 qbt1 *= exp_E_MLstem(type, (o > 1) ? S1[o - 1] : -1, (p < n) ? S1[p + 1] : -1, Pf); in pf_unstru()
492 qqm[p] += qbt1; in pf_unstru()
H A DLPfold.c678 FLT_OR_DBL temp, Qmax, qbt1, **q, **qb, **qm, **qm2, **pR; in vrna_probs_window() local
764 qbt1 = 0.; in vrna_probs_window()
772 qbt1 += vrna_exp_E_hp_loop(vc, i, j); in vrna_probs_window()
774 qbt1 += vrna_exp_E_int_loop(vc, i, j); in vrna_probs_window()
776 qbt1 += vrna_exp_E_mb_loop_fast(vc, i, j, aux_mx_ml); in vrna_probs_window()
779 qb[i][j] = qbt1; in vrna_probs_window()
H A D2Dpfold.c3312 double r, qbt1 = 0.; in backtrack() local
3339 … qbt1 = exp_E_Hairpin(u, type, S1[i + 1], S1[j - 1], sequence + i - 1, pf_params) * scale[u + 2]; in backtrack()
3341 if (qbt1 >= r) in backtrack()
3365 qbt1 += Q_B_rem[my_iindx[k] - l] * tmp_en; in backtrack()
3366 if (qbt1 > r) in backtrack()
3378 qbt1 += Q_B[my_iindx[k] - l][cnt1][cnt2 / 2] * tmp_en; in backtrack()
3379 if (qbt1 > r) in backtrack()
3414 … qbt1 = exp_E_Hairpin(u, type, S1[i + 1], S1[j - 1], sequence + i - 1, pf_params) * scale[u + 2]; in backtrack()
3416 if (qbt1 >= r) in backtrack()
3441 qbt1 += Q_B[my_iindx[k] - l][cnt1][cnt2 / 2] * tmp_en; in backtrack()
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/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/loops/
H A Dinternal_pf.c152 qbt1 = 0.; in exp_E_int_loop()
556 return qbt1; in exp_E_int_loop()
773 qbt1 = 0.; in exp_E_interior_loop()
778 return qbt1; in exp_E_interior_loop()
781 return qbt1; in exp_E_interior_loop()
784 return qbt1; in exp_E_interior_loop()
847 qbt1 += q_temp * in exp_E_interior_loop()
870 qbt1 += q_temp * in exp_E_interior_loop()
873 qbt1 += q_temp * in exp_E_interior_loop()
876 qbt1 += q_temp * in exp_E_interior_loop()
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H A Dhairpin_pf.c190 FLT_OR_DBL q, qbt1, *scale; in exp_eval_hp_loop() local
234 qbt1 = 1.; in exp_eval_hp_loop()
242 qbt1 *= exp_E_Hairpin(u, type, S3[s][i], S5[s][j], Ss[s] + a2s[s][i] - 1, P); in exp_eval_hp_loop()
245 q = qbt1; in exp_eval_hp_loop()
283 FLT_OR_DBL q, qbt1, *scale; in exp_eval_ext_hp_loop() local
333 qbt1 = 1.; in exp_eval_ext_hp_loop()
347 qbt1 *= exp_E_Hairpin(u1_local + u2_local, type, S3[s][j], S5[s][i], loopseq, P); in exp_eval_ext_hp_loop()
350 q = qbt1; in exp_eval_ext_hp_loop()
H A Dexternal_pf.c590 FLT_OR_DBL qbt1, *qq, **qqu, *G, **G_local; in exp_E_ext_fast() local
613 qbt1 = 0.; in exp_E_ext_fast()
616 qbt1 += reduce_ext_ext_fast(fc, i, j, aux_mx, evaluate, &hc_dat_local, &sc_wrapper); in exp_E_ext_fast()
623 qbt1 += G_local[i][j]; in exp_E_ext_fast()
628 qbt1 += G[ij]; in exp_E_ext_fast()
632 qq[i] = qbt1; in exp_E_ext_fast()
635 qqu[0][i] = qbt1; in exp_E_ext_fast()
638 qbt1 += reduce_ext_up_fast(fc, i, j, aux_mx, evaluate, &hc_dat_local, &sc_wrapper); in exp_E_ext_fast()
640 qbt1 += split_ext_fast(fc, i, j, aux_mx, evaluate, &hc_dat_local, &sc_wrapper); in exp_E_ext_fast()
644 qbt1 += fc->aux_grammar->cb_aux_exp_f(fc, i, j, fc->aux_grammar->data); in exp_E_ext_fast()
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H A Dmultibranch_pf.c247 FLT_OR_DBL qbt1, temp, qqqmmm, *qm, **qm_local, *scale, expMLclosing, *qqm1; in exp_E_mb_loop_fast() local
276 qbt1 = 0.; in exp_E_mb_loop_fast()
371 qbt1 += temp * in exp_E_mb_loop_fast()
377 return qbt1; in exp_E_mb_loop_fast()
392 FLT_OR_DBL qbt1, temp, *qm, *qb, *qqm, *qqm1, **qqmu, q_temp, q_temp2, *G, in exp_E_ml_fast() local
435 qbt1 = 0; in exp_E_ml_fast()
479 qbt1 = (sliding_window) ? qb_local[i][j] : qb[ij]; in exp_E_ml_fast()
487 qbt1 *= exp_E_MLstem(type, in exp_E_ml_fast()
503 qbt1 *= q_temp; in exp_E_ml_fast()
508 qbt1 *= sc_wrapper.red_stem(i, j, i, j, &sc_wrapper); in exp_E_ml_fast()
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