Searched refs:qrSeedLen (Results 1 – 3 of 3) sorted by relevance
58 unsigned qrSeedLen; member80 k(0), K(0), qrSeedLen(0), spacedSeed(), in AssemblyParams()99 qrSeedLen = 0; in resetSpacedSeedParams()116 if (o.qrSeedLen > 0)118 << o.qrSeedLen << std::endl;
66 static inline std::string qrSeedPair(unsigned k, unsigned qrSeedLen) in qrSeedPair() argument68 assert(qrSeedLen <= k/2); in qrSeedPair()70 std::string qrSeed = SpacedSeed::qrSeed(qrSeedLen); in qrSeedPair()
226 else if (params.qrSeedLen > 0) in initGlobals()227 MaskedKmer::setMask(SpacedSeed::qrSeedPair(params.k, params.qrSeedLen)); in initGlobals()460 arg >> params.qrSeedLen; in main()506 if (params.k > 0 && params.qrSeedLen > 0 && in main()507 (params.qrSeedLen < 11 || params.qrSeedLen > params.k / 2)) { in main()