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Searched refs:qual2 (Results 1 – 25 of 253) sorted by relevance

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/dports/databases/opentsdb/opentsdb-2.3.0/test/tools/
H A DTestFsck.java166 final byte[] qual2 = { 0x00, 0x27 }; in noErrors()
170 storage.addColumn(ROW, qual2, val2); in noErrors()
182 final byte[] qual2 = { 0x00, 0x27 }; in noErrorsMultipleRows()
186 storage.addColumn(ROW, qual2, val2); in noErrorsMultipleRows()
188 storage.addColumn(ROW2, qual2, val2); in noErrorsMultipleRows()
228 final byte[] qual2 = { 0x00, 0x27 }; in noErrorsAnnotation()
234 storage.addColumn(ROW, qual2, val2); in noErrorsAnnotation()
299 final byte[] qual2 = { 0x00, 0x27 }; in noErrorsCompacted()
349 final byte[] qual2 = { 0x00, 0x27 }; in noErrorsCompactedMixReverse()
566 final byte[] qual2 = { 0x01 }; in oneByteQualifier()
[all …]
/dports/databases/opentsdb/opentsdb-2.3.0/test/core/
H A DTestCompactionQueue.java262 kvs.add(makekv(qual2, val2)); in twoCellRow()
306 kvs.add(makekv(qual2, val2)); in twoCellRowWAnnotation()
405 kvs.add(makekv(qual2, val2)); in twoCellRowMS()
427 kvs.add(makekv(qual2, val2)); in sortMsAndS()
443 qual2, qual3 })); in sortMsAndS()
455 kvs.add(makekv(qual2, val2)); in secondsOutOfOrder()
471 qual2, qual3 })); in secondsOutOfOrder()
485 kvs.add(makekv(qual2, val2)); in msOutOfOrder()
512 kvs.add(makekv(qual2, val2)); in secondAndMs()
536 kvs.add(makekv(qual2, val2)); in secondAndMsWAnnotation()
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H A DTestRowSeq.java79 final byte[] qual2 = { 0x00, 0x27 }; in setRow()
95 final byte[] qual2 = { 0x00, 0x27 }; in setRowSalted()
110 final byte[] qual2 = { 0x00, 0x27 }; in setRowAlreadySet()
127 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeLater()
158 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeLaterSalted()
192 final byte[] qual2 = { 0x00, 0x47 }; in addRowMergeEarlier()
223 final byte[] qual2 = { 0x00, 0x47 }; in addRowMergeEarlierSalted()
257 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeMiddle()
300 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeMiddleSalted()
347 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeDuplicateLater()
[all …]
H A DTestSpan.java81 final byte[] qual2 = { 0x00, 0x27 }; in addRow()
100 final byte[] qual2 = { 0x00, 0x27 }; in addRowSalted()
127 final byte[] qual2 = { 0x00, 0x27 }; in addRowBadKeyLength()
145 final byte[] qual2 = { 0x00, 0x27 }; in addRowMissMatchedMetric()
163 final byte[] qual2 = { 0x00, 0x27 }; in addRowMissMatchedTagk()
181 final byte[] qual2 = { 0x00, 0x27 }; in addRowMissMatchedTagv()
199 final byte[] qual2 = { 0x00, 0x27 }; in addRowOutOfOrder()
224 final byte[] qual2 = { 0x00, 0x27 }; in timestampNormalized()
293 final byte[] qual2 = { 0x00, 0x27 }; in iterateNormalizedMS()
391 final byte[] qual2 = { 0x00, 0x27 }; in lastTimestampInRow()
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H A DTestInternal.java46 final byte[] qual2 = { 0x00, 0x27 }; in extractDataPointsFixQualifierFlags()
53 row.add(makekv(qual2, val2)); in extractDataPointsFixQualifierFlags()
70 final byte[] qual2 = { 0x00, 0x2B }; in extractDataPointsFixFloatingPointValue()
77 row.add(makekv(qual2, val2)); in extractDataPointsFixFloatingPointValue()
94 final byte[] qual2 = { 0x00, 0x2B }; in extractDataPointsFixFloatingPointValueCorrupt()
101 row.add(makekv(qual2, val2)); in extractDataPointsFixFloatingPointValueCorrupt()
118 row.add(makekv(qual2, val2)); in extractDataPointsMixSecondsMs()
138 row.add(makekv(qual2, val2)); in extractDataPointsWithNonDataColumns()
160 row.add(makekv(qual2, val2)); in extractDataPointsWithNonDataColumnsSort()
175 final byte[] qual2 = { 0x00, 0x27 }; in extractDataPointsCompactSeconds()
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/dports/biology/bowtie/bowtie-1.3.1/scripts/
H A Dreconcile_alignments_pe.pl222 my $qual2 = $s2[5];
230 $qual2 = reverse $qual2;
236 $hits_hash{$read_name}{qual2} = $fasta ? "" : $qual2;
256 my ($name2, $seq2, $qual2) = get_read($UN2);
283 $un_hash{$name}{qual2} = $qual2;
330 $max_hash{$name}{qual2} = $qual2;
348 my ($name2, $seq2, $qual2) = get_read($AL2);
371 $al_hash{$name}{qual2} = $qual2;
433 $un_hash{$name}{qual2} eq $qual2 ||
447 $max_hash{$name}{qual2} eq $qual2 ||
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H A Dfastq_to_tabbed.pl100 my $qual2 = <M2>;
101 chomp($qual2);
102 print "$name1\t$seq1\t$qual1\t$seq2\t$qual2\n" unless $shuffle;
103 push @output, "$name1\t$seq1\t$qual1\t$seq2\t$qual2\n" if $shuffle;
/dports/security/py-stix2/cti-python-stix2-2.1.0/stix2/equivalence/pattern/compare/
H A Dobservation.py26 def repeats_cmp(qual1, qual2): argument
30 return generic_constant_cmp(qual1.times_to_repeat, qual2.times_to_repeat)
33 def within_cmp(qual1, qual2): argument
38 qual1.number_of_seconds, qual2.number_of_seconds,
42 def startstop_cmp(qual1, qual2): argument
49 (qual2.start_time, qual2.stop_time),
/dports/biology/bedtools/bedtools2-2.30.0/src/bamToFastq/
H A DbamToFastq.cpp116 string qual1, qual2; in WritePairs() local
134 qual2 = alignments[1].Qualities; in WritePairs()
141 reverseSequence(qual2); in WritePairs()
149 qual2 = alignments[0].Qualities; in WritePairs()
156 reverseSequence(qual2); in WritePairs()
185 qual2 = alignments[mateIndex].Qualities; in WritePairs()
192 reverseSequence(qual2); in WritePairs()
215 qual2 = alignments[0].Qualities; in WritePairs()
224 reverseSequence(qual2); in WritePairs()
249 *_fq2 << qual2 << endl; in WritePairs()
/dports/devel/ppl/ppl-1.2/src/
H A Dchecked_defs.hh127 #define PPL_DECLARE_FUN2_0_0(name, ret_type, qual1, type1, qual2, type2) \ argument
134 PPL_U(qual2) PPL_U(type2)& arg2) { \
140 qual2, type2, after1) \ argument
147 PPL_U(qual2) PPL_U(type2)& arg2, \
153 #define PPL_DECLARE_FUN2_0_2(name, ret_type, qual1, type1, qual2, type2, \ argument
161 PPL_U(qual2) PPL_U(type2)& arg2, \
168 qual2, type2, qual3, type3, after1) \ argument
175 PPL_U(qual2) PPL_U(type2)& arg2, \
184 qual1, type1, qual2, type2, qual3, type3, \ argument
285 qual2, type2) \ argument
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/dports/biology/fastp/fastp-0.23.2/src/
H A Dbasecorrector.cpp28 const char* qual2 = r2->mQuality->c_str(); in correctByOverlapAnalysis() local
42 if(qual1[p1] >= GOOD_QUAL && qual2[p2] <= BAD_QUAL) { in correctByOverlapAnalysis()
51 } else if(qual2[p2] >= GOOD_QUAL && qual1[p1] <= BAD_QUAL) { in correctByOverlapAnalysis()
54 (*r1->mQuality)[p1] = qual2[p2]; in correctByOverlapAnalysis()
H A Dread.cpp224 const char* qual2 = rcRight->mQuality->c_str(); in fastMerge() local
243 if((qual1[offset+i]>='?' && qual2[i]<='0') || (qual1[offset+i]<='0' && qual2[i]>='?')){ in fastMerge()
270 if(qual1[offset+i]>='?' && qual2[i]<='0'){ in fastMerge()
275 mergedQual[offset+i] = qual2[i]; in fastMerge()
279 mergedQual[offset+i] = qual1[offset+i] + qual2[i] - 33; in fastMerge()
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/seq_io/
H A Dtest_stream_write_fasta.h119 …CharString qual2 = "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!… in SEQAN_DEFINE_TEST() local
122 writeRecord(outStream, meta2, seq2, qual2, Fastq()); in SEQAN_DEFINE_TEST()
169 …CharString qual2 = "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!… in SEQAN_DEFINE_TEST() local
172 writeRecord(outStream, meta2, seq2, qual2, Fastq(), SequenceOutputOptions(70, true)); in SEQAN_DEFINE_TEST()
/dports/databases/hbase/hbase-1.2.1/hbase-server/src/test/java/org/apache/hadoop/hbase/io/encoding/
H A DTestPrefixTree.java63 private final static byte[] qual2 = Bytes.toBytes("qf_2"); field in TestPrefixTree
94 put.addColumn(fam, qual2, Bytes.toBytes("c2-value")); in testHBASE11728()
97 put.addColumn(fam, qual2, Bytes.toBytes("c2-value-2")); in testHBASE11728()
100 put.addColumn(fam, qual2, Bytes.toBytes("c2-value-3")); in testHBASE11728()
132 scan.addColumn(fam, qual2); in testHBASE11728()
148 scan.addColumn(fam, qual2); in testHBASE11728()
164 scan.addColumn(fam, qual2); in testHBASE11728()
/dports/databases/hbase/hbase-1.2.1/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/
H A DTestAtomicOperation.java90 static final byte[] qual2 = Bytes.toBytes("qual2"); field in TestAtomicOperation
132 a.add(fam1, qual2, Bytes.toBytes(v2)); in testAppend()
136 a.add(fam1, qual2, Bytes.toBytes(v1)); in testAppend()
176 assertICV(row, fam1, qual2, expectedTotal*2); in testIncrementMultiThreads()
242 inc.addColumn(fam1, qual2, amount*2); in run()
252 assertTrue(result.getValue(fam1, qual2) != null); in run()
254 Bytes.toLong(result.getValue(fam1, qual2))); in run()
287 a.add(fam1, qual2, val); in testAppendMultiThreads()
295 result.getValue(fam1, qual2).length); in testAppendMultiThreads()
369 d.deleteColumns(fam1, qual2, ts); in testRowMutationMultiThreads()
[all …]
/dports/databases/hbase/hbase-1.2.1/hbase-server/src/test/java/org/apache/hadoop/hbase/security/visibility/
H A DTestVisibilityLabels.java701 final byte[] qual2 = Bytes.toBytes("qual2"); in testMultipleVersions()
713 put.add(fam, qual2, 3l, v1); in testMultipleVersions()
715 put.add(fam2, qual2, 3l, v1); in testMultipleVersions()
720 put.add(fam, qual2, 4l, v2); in testMultipleVersions()
722 put.add(fam2, qual2, 4l, v2); in testMultipleVersions()
728 put.add(fam, qual2, 3l, v1); in testMultipleVersions()
730 put.add(fam2, qual2, 3l, v1); in testMultipleVersions()
735 put.add(fam, qual2, 4l, v2); in testMultipleVersions()
737 put.add(fam2, qual2, 4l, v2); in testMultipleVersions()
800 p2.add(fam, qual2, value); in testMutateRow()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/oligofar/
H A Dcquery.hpp50 …st string& data1, const string& qual1, const string& data2, const string& qual2, int base = kDefau…
105 …id, const string& data1, const string& qual1, const string& data2, const string& qual2, int base );
134 …id, const string& data1, const string& qual1, const string& data2, const string& qual2, int base ) in CQuery() argument
140 …case CSeqCoding::eCoding_ncbiqna: x_InitNcbiqna( id, data1 + qual1, data2 + qual2, base ); break; … in CQuery()
142 …case CSeqCoding::eCoding_colorsp: x_InitColorspace( id, data1, qual1, data2, qual2, base ); break;… in CQuery()
148 … id, const string& data1, const string& qual1, const string& data2, const string& qual2, int base ) in x_InitColorspace() argument
157 if( qual2.length() ) m_flags |= fStoresQuality1; in x_InitColorspace()
159 int q1 = qual2.length(); in x_InitColorspace()
180 for( unsigned i = 0, j = m_offset[1] + m_length[1]; i < qual2.length(); ) in x_InitColorspace()
181 m_data[j++] = qual2[i] + (33 - base); // SAM standard is 33 in x_InitColorspace()
/dports/www/webtrees/webtrees-1.7.18/webtrees/app/
H A DDate.php48 public $qual2; variable in Fisharebest\\Webtrees\\Date
71 $this->qual2 = $match[3];
240 $q2 = $this->qual2;
244 $d2 = $this->date2->format($date_format, $this->qual2);
263 $d2tmp = $d2conv->format($date_format, $this->qual2);
428 $tmp->qual2 = '';
/dports/audio/musepack/musepack_src_r475/libmpcpsy/
H A Dcvd.c85 float* qual2, in CEP_Analyse2048() argument
215 *qual2 = ref; in CEP_Analyse2048()
249 float qual2; in CVD2048() local
265 CEP_Analyse2048 ( m, &res1, &res2, &qual1, &qual2, cep ); in CVD2048()
/dports/www/webtrees20/webtrees-2.0.19/webtrees/app/
H A DDate.php58 public $qual2 = ''; variable in Fisharebest\\Webtrees\\Date
81 $this->qual2 = $match[3];
277 $q2 = $this->qual2;
281 $d2 = $this->date2->format($date_format, $this->qual2);
300 $d2tmp = $d2conv->format($date_format, $this->qual2);
468 $tmp->qual2 = '';
/dports/games/exult/exult-snapshot-v1.7.0.20211128/shapes/shapeinf/
H A Deffhpinf.h89 auto qual2 = static_cast<unsigned short>(other.quality); variable
92 return (frame1 == frame2 && qual1 < qual2) || (frame1 < frame2);
H A Dfrusefun.h103 auto qual2 = static_cast<unsigned short>(other.quality); variable
106 return (frame1 == frame2 && qual1 < qual2) || (frame1 < frame2);
H A Dfrflags.h126 auto qual2 = static_cast<unsigned short>(other.quality); variable
129 return (frame1 == frame2 && qual1 < qual2) || (frame1 < frame2);
H A Dfrnameinf.h112 auto qual2 = static_cast<unsigned short>(other.quality); variable
115 return (frame1 == frame2 && qual1 < qual2) || (frame1 < frame2);
/dports/biology/bowtie/bowtie-1.3.1/scripts/test/
H A Dcs_trim.pl176 my ($name, $args, $num, $char1, $qual1, $char2, $qual2) = @_;
177 my $case = "$name, $args, $num, $char1, $qual1, $char2, $qual2";
208 …!defined($qual2) || $fq eq $qual2 || die "Expected first qual $qual2, got $fq\nCase: $case\nBowtie…

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