/dports/databases/opentsdb/opentsdb-2.3.0/test/tools/ |
H A D | TestFsck.java | 166 final byte[] qual2 = { 0x00, 0x27 }; in noErrors() 170 storage.addColumn(ROW, qual2, val2); in noErrors() 182 final byte[] qual2 = { 0x00, 0x27 }; in noErrorsMultipleRows() 186 storage.addColumn(ROW, qual2, val2); in noErrorsMultipleRows() 188 storage.addColumn(ROW2, qual2, val2); in noErrorsMultipleRows() 228 final byte[] qual2 = { 0x00, 0x27 }; in noErrorsAnnotation() 234 storage.addColumn(ROW, qual2, val2); in noErrorsAnnotation() 299 final byte[] qual2 = { 0x00, 0x27 }; in noErrorsCompacted() 349 final byte[] qual2 = { 0x00, 0x27 }; in noErrorsCompactedMixReverse() 566 final byte[] qual2 = { 0x01 }; in oneByteQualifier() [all …]
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/dports/databases/opentsdb/opentsdb-2.3.0/test/core/ |
H A D | TestCompactionQueue.java | 262 kvs.add(makekv(qual2, val2)); in twoCellRow() 306 kvs.add(makekv(qual2, val2)); in twoCellRowWAnnotation() 405 kvs.add(makekv(qual2, val2)); in twoCellRowMS() 427 kvs.add(makekv(qual2, val2)); in sortMsAndS() 443 qual2, qual3 })); in sortMsAndS() 455 kvs.add(makekv(qual2, val2)); in secondsOutOfOrder() 471 qual2, qual3 })); in secondsOutOfOrder() 485 kvs.add(makekv(qual2, val2)); in msOutOfOrder() 512 kvs.add(makekv(qual2, val2)); in secondAndMs() 536 kvs.add(makekv(qual2, val2)); in secondAndMsWAnnotation() [all …]
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H A D | TestRowSeq.java | 79 final byte[] qual2 = { 0x00, 0x27 }; in setRow() 95 final byte[] qual2 = { 0x00, 0x27 }; in setRowSalted() 110 final byte[] qual2 = { 0x00, 0x27 }; in setRowAlreadySet() 127 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeLater() 158 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeLaterSalted() 192 final byte[] qual2 = { 0x00, 0x47 }; in addRowMergeEarlier() 223 final byte[] qual2 = { 0x00, 0x47 }; in addRowMergeEarlierSalted() 257 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeMiddle() 300 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeMiddleSalted() 347 final byte[] qual2 = { 0x00, 0x27 }; in addRowMergeDuplicateLater() [all …]
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H A D | TestSpan.java | 81 final byte[] qual2 = { 0x00, 0x27 }; in addRow() 100 final byte[] qual2 = { 0x00, 0x27 }; in addRowSalted() 127 final byte[] qual2 = { 0x00, 0x27 }; in addRowBadKeyLength() 145 final byte[] qual2 = { 0x00, 0x27 }; in addRowMissMatchedMetric() 163 final byte[] qual2 = { 0x00, 0x27 }; in addRowMissMatchedTagk() 181 final byte[] qual2 = { 0x00, 0x27 }; in addRowMissMatchedTagv() 199 final byte[] qual2 = { 0x00, 0x27 }; in addRowOutOfOrder() 224 final byte[] qual2 = { 0x00, 0x27 }; in timestampNormalized() 293 final byte[] qual2 = { 0x00, 0x27 }; in iterateNormalizedMS() 391 final byte[] qual2 = { 0x00, 0x27 }; in lastTimestampInRow() [all …]
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H A D | TestInternal.java | 46 final byte[] qual2 = { 0x00, 0x27 }; in extractDataPointsFixQualifierFlags() 53 row.add(makekv(qual2, val2)); in extractDataPointsFixQualifierFlags() 70 final byte[] qual2 = { 0x00, 0x2B }; in extractDataPointsFixFloatingPointValue() 77 row.add(makekv(qual2, val2)); in extractDataPointsFixFloatingPointValue() 94 final byte[] qual2 = { 0x00, 0x2B }; in extractDataPointsFixFloatingPointValueCorrupt() 101 row.add(makekv(qual2, val2)); in extractDataPointsFixFloatingPointValueCorrupt() 118 row.add(makekv(qual2, val2)); in extractDataPointsMixSecondsMs() 138 row.add(makekv(qual2, val2)); in extractDataPointsWithNonDataColumns() 160 row.add(makekv(qual2, val2)); in extractDataPointsWithNonDataColumnsSort() 175 final byte[] qual2 = { 0x00, 0x27 }; in extractDataPointsCompactSeconds() [all …]
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/dports/biology/bowtie/bowtie-1.3.1/scripts/ |
H A D | reconcile_alignments_pe.pl | 222 my $qual2 = $s2[5]; 230 $qual2 = reverse $qual2; 236 $hits_hash{$read_name}{qual2} = $fasta ? "" : $qual2; 256 my ($name2, $seq2, $qual2) = get_read($UN2); 283 $un_hash{$name}{qual2} = $qual2; 330 $max_hash{$name}{qual2} = $qual2; 348 my ($name2, $seq2, $qual2) = get_read($AL2); 371 $al_hash{$name}{qual2} = $qual2; 433 $un_hash{$name}{qual2} eq $qual2 || 447 $max_hash{$name}{qual2} eq $qual2 || [all …]
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H A D | fastq_to_tabbed.pl | 100 my $qual2 = <M2>; 101 chomp($qual2); 102 print "$name1\t$seq1\t$qual1\t$seq2\t$qual2\n" unless $shuffle; 103 push @output, "$name1\t$seq1\t$qual1\t$seq2\t$qual2\n" if $shuffle;
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/dports/security/py-stix2/cti-python-stix2-2.1.0/stix2/equivalence/pattern/compare/ |
H A D | observation.py | 26 def repeats_cmp(qual1, qual2): argument 30 return generic_constant_cmp(qual1.times_to_repeat, qual2.times_to_repeat) 33 def within_cmp(qual1, qual2): argument 38 qual1.number_of_seconds, qual2.number_of_seconds, 42 def startstop_cmp(qual1, qual2): argument 49 (qual2.start_time, qual2.stop_time),
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/dports/biology/bedtools/bedtools2-2.30.0/src/bamToFastq/ |
H A D | bamToFastq.cpp | 116 string qual1, qual2; in WritePairs() local 134 qual2 = alignments[1].Qualities; in WritePairs() 141 reverseSequence(qual2); in WritePairs() 149 qual2 = alignments[0].Qualities; in WritePairs() 156 reverseSequence(qual2); in WritePairs() 185 qual2 = alignments[mateIndex].Qualities; in WritePairs() 192 reverseSequence(qual2); in WritePairs() 215 qual2 = alignments[0].Qualities; in WritePairs() 224 reverseSequence(qual2); in WritePairs() 249 *_fq2 << qual2 << endl; in WritePairs()
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/dports/devel/ppl/ppl-1.2/src/ |
H A D | checked_defs.hh | 127 #define PPL_DECLARE_FUN2_0_0(name, ret_type, qual1, type1, qual2, type2) \ argument 134 PPL_U(qual2) PPL_U(type2)& arg2) { \ 140 qual2, type2, after1) \ argument 147 PPL_U(qual2) PPL_U(type2)& arg2, \ 153 #define PPL_DECLARE_FUN2_0_2(name, ret_type, qual1, type1, qual2, type2, \ argument 161 PPL_U(qual2) PPL_U(type2)& arg2, \ 168 qual2, type2, qual3, type3, after1) \ argument 175 PPL_U(qual2) PPL_U(type2)& arg2, \ 184 qual1, type1, qual2, type2, qual3, type3, \ argument 285 qual2, type2) \ argument [all …]
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/dports/biology/fastp/fastp-0.23.2/src/ |
H A D | basecorrector.cpp | 28 const char* qual2 = r2->mQuality->c_str(); in correctByOverlapAnalysis() local 42 if(qual1[p1] >= GOOD_QUAL && qual2[p2] <= BAD_QUAL) { in correctByOverlapAnalysis() 51 } else if(qual2[p2] >= GOOD_QUAL && qual1[p1] <= BAD_QUAL) { in correctByOverlapAnalysis() 54 (*r1->mQuality)[p1] = qual2[p2]; in correctByOverlapAnalysis()
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H A D | read.cpp | 224 const char* qual2 = rcRight->mQuality->c_str(); in fastMerge() local 243 if((qual1[offset+i]>='?' && qual2[i]<='0') || (qual1[offset+i]<='0' && qual2[i]>='?')){ in fastMerge() 270 if(qual1[offset+i]>='?' && qual2[i]<='0'){ in fastMerge() 275 mergedQual[offset+i] = qual2[i]; in fastMerge() 279 mergedQual[offset+i] = qual1[offset+i] + qual2[i] - 33; in fastMerge()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/seq_io/ |
H A D | test_stream_write_fasta.h | 119 …CharString qual2 = "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!… in SEQAN_DEFINE_TEST() local 122 writeRecord(outStream, meta2, seq2, qual2, Fastq()); in SEQAN_DEFINE_TEST() 169 …CharString qual2 = "!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!… in SEQAN_DEFINE_TEST() local 172 writeRecord(outStream, meta2, seq2, qual2, Fastq(), SequenceOutputOptions(70, true)); in SEQAN_DEFINE_TEST()
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/dports/databases/hbase/hbase-1.2.1/hbase-server/src/test/java/org/apache/hadoop/hbase/io/encoding/ |
H A D | TestPrefixTree.java | 63 private final static byte[] qual2 = Bytes.toBytes("qf_2"); field in TestPrefixTree 94 put.addColumn(fam, qual2, Bytes.toBytes("c2-value")); in testHBASE11728() 97 put.addColumn(fam, qual2, Bytes.toBytes("c2-value-2")); in testHBASE11728() 100 put.addColumn(fam, qual2, Bytes.toBytes("c2-value-3")); in testHBASE11728() 132 scan.addColumn(fam, qual2); in testHBASE11728() 148 scan.addColumn(fam, qual2); in testHBASE11728() 164 scan.addColumn(fam, qual2); in testHBASE11728()
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/dports/databases/hbase/hbase-1.2.1/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/ |
H A D | TestAtomicOperation.java | 90 static final byte[] qual2 = Bytes.toBytes("qual2"); field in TestAtomicOperation 132 a.add(fam1, qual2, Bytes.toBytes(v2)); in testAppend() 136 a.add(fam1, qual2, Bytes.toBytes(v1)); in testAppend() 176 assertICV(row, fam1, qual2, expectedTotal*2); in testIncrementMultiThreads() 242 inc.addColumn(fam1, qual2, amount*2); in run() 252 assertTrue(result.getValue(fam1, qual2) != null); in run() 254 Bytes.toLong(result.getValue(fam1, qual2))); in run() 287 a.add(fam1, qual2, val); in testAppendMultiThreads() 295 result.getValue(fam1, qual2).length); in testAppendMultiThreads() 369 d.deleteColumns(fam1, qual2, ts); in testRowMutationMultiThreads() [all …]
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/dports/databases/hbase/hbase-1.2.1/hbase-server/src/test/java/org/apache/hadoop/hbase/security/visibility/ |
H A D | TestVisibilityLabels.java | 701 final byte[] qual2 = Bytes.toBytes("qual2"); in testMultipleVersions() 713 put.add(fam, qual2, 3l, v1); in testMultipleVersions() 715 put.add(fam2, qual2, 3l, v1); in testMultipleVersions() 720 put.add(fam, qual2, 4l, v2); in testMultipleVersions() 722 put.add(fam2, qual2, 4l, v2); in testMultipleVersions() 728 put.add(fam, qual2, 3l, v1); in testMultipleVersions() 730 put.add(fam2, qual2, 3l, v1); in testMultipleVersions() 735 put.add(fam, qual2, 4l, v2); in testMultipleVersions() 737 put.add(fam2, qual2, 4l, v2); in testMultipleVersions() 800 p2.add(fam, qual2, value); in testMutateRow() [all …]
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/oligofar/ |
H A D | cquery.hpp | 50 …st string& data1, const string& qual1, const string& data2, const string& qual2, int base = kDefau… 105 …id, const string& data1, const string& qual1, const string& data2, const string& qual2, int base ); 134 …id, const string& data1, const string& qual1, const string& data2, const string& qual2, int base ) in CQuery() argument 140 …case CSeqCoding::eCoding_ncbiqna: x_InitNcbiqna( id, data1 + qual1, data2 + qual2, base ); break; … in CQuery() 142 …case CSeqCoding::eCoding_colorsp: x_InitColorspace( id, data1, qual1, data2, qual2, base ); break;… in CQuery() 148 … id, const string& data1, const string& qual1, const string& data2, const string& qual2, int base ) in x_InitColorspace() argument 157 if( qual2.length() ) m_flags |= fStoresQuality1; in x_InitColorspace() 159 int q1 = qual2.length(); in x_InitColorspace() 180 for( unsigned i = 0, j = m_offset[1] + m_length[1]; i < qual2.length(); ) in x_InitColorspace() 181 m_data[j++] = qual2[i] + (33 - base); // SAM standard is 33 in x_InitColorspace()
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/dports/www/webtrees/webtrees-1.7.18/webtrees/app/ |
H A D | Date.php | 48 public $qual2; variable in Fisharebest\\Webtrees\\Date 71 $this->qual2 = $match[3]; 240 $q2 = $this->qual2; 244 $d2 = $this->date2->format($date_format, $this->qual2); 263 $d2tmp = $d2conv->format($date_format, $this->qual2); 428 $tmp->qual2 = '';
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/dports/audio/musepack/musepack_src_r475/libmpcpsy/ |
H A D | cvd.c | 85 float* qual2, in CEP_Analyse2048() argument 215 *qual2 = ref; in CEP_Analyse2048() 249 float qual2; in CVD2048() local 265 CEP_Analyse2048 ( m, &res1, &res2, &qual1, &qual2, cep ); in CVD2048()
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/dports/www/webtrees20/webtrees-2.0.19/webtrees/app/ |
H A D | Date.php | 58 public $qual2 = ''; variable in Fisharebest\\Webtrees\\Date 81 $this->qual2 = $match[3]; 277 $q2 = $this->qual2; 281 $d2 = $this->date2->format($date_format, $this->qual2); 300 $d2tmp = $d2conv->format($date_format, $this->qual2); 468 $tmp->qual2 = '';
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/dports/games/exult/exult-snapshot-v1.7.0.20211128/shapes/shapeinf/ |
H A D | effhpinf.h | 89 auto qual2 = static_cast<unsigned short>(other.quality); variable 92 return (frame1 == frame2 && qual1 < qual2) || (frame1 < frame2);
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H A D | frusefun.h | 103 auto qual2 = static_cast<unsigned short>(other.quality); variable 106 return (frame1 == frame2 && qual1 < qual2) || (frame1 < frame2);
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H A D | frflags.h | 126 auto qual2 = static_cast<unsigned short>(other.quality); variable 129 return (frame1 == frame2 && qual1 < qual2) || (frame1 < frame2);
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H A D | frnameinf.h | 112 auto qual2 = static_cast<unsigned short>(other.quality); variable 115 return (frame1 == frame2 && qual1 < qual2) || (frame1 < frame2);
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/dports/biology/bowtie/bowtie-1.3.1/scripts/test/ |
H A D | cs_trim.pl | 176 my ($name, $args, $num, $char1, $qual1, $char2, $qual2) = @_; 177 my $case = "$name, $args, $num, $char1, $qual1, $char2, $qual2"; 208 …!defined($qual2) || $fq eq $qual2 || die "Expected first qual $qual2, got $fq\nCase: $case\nBowtie…
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