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Searched refs:qualat (Results 1 – 8 of 8) sorted by relevance

/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Seq/
H A DPrimaryQual.pm452 sub qualat { subroutine
454 my @qualat = @{$self->subqual($val,$val)};
455 if (scalar(@qualat) == 1) {
456 return $qualat[0];
H A DSequenceTrace.pm649 sub qualat { subroutine
651 return $self->{swq}->qualat($val);
843 $peak_quality = $self->qual_obj()->qualat($pos+1);
951 $probabilities->{$base_here} = $self->qual_obj()->qualat($current);
1024 my $qual_here = $self->qual_obj()->qualat($count);
H A DQualI.pm305 sub qualat { subroutine
H A DQuality.pm745 sub qualat { subroutine
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SeqIO/
H A Dphd.t43 print("What is the quality at $position? (using qualat)\n");
44 print($phd->qualat($position)."\n");
108 print ">revcom_qual at 6\n",$revcom->qualat(6),"\n";
164 # print ">revcom_qual at 6\n",$revcom->qualat(6),"\n";
H A Dscf.t71 is $swq->qualat($start), '18', 'qualat';
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/
H A Dphd.pm262 $swq->qualat($curr),
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/LocalDB/
H A DQual.t53 is $obj->qualat(12), 31;