| /dports/biology/checkm/CheckM-1.0.18/checkm/ |
| H A D | hmmer.py | 193 self.query_accession = values[3]
194 if self.query_accession == '-':
195 self.query_accession = self.query_name
217 self.query_accession,
246 self.query_accession = values[4]
247 if self.query_accession == '-':
248 self.query_accession = self.query_name
274 self.query_accession,
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| H A D | resultsParser.py | 310 model = self.models[hit.query_accession]
350 if hit.query_accession in self.markerHits:
353 for h in self.markerHits[hit.query_accession]:
359 self.markerHits[hit.query_accession].append(hit)
362 self.markerHits[hit.query_accession].append(hit)
363 self.markerHits[hit.query_accession].remove(previousHitToORF)
366 self.markerHits[hit.query_accession] = [hit]
627 …summary[geneId][hit.query_accession] = summary[geneId].get(hit.query_accession, []) + [[hit.ali_fr…
805 … rowStr += '\t' + hit.query_accession + ',' + str(hit.ali_from) + ',' + str(hit.ali_to)
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| /dports/biology/checkm/CheckM-1.0.18/checkm/util/ |
| H A D | pfam.py | 114 pfamIdI = hits[i].query_accession
124 pfamIdJ = hits[j].query_accession
145 filteredMarkers[hits[i].query_accession].append(hits[i])
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| /dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/Search/Result/ |
| H A D | PullResultI.pm | 139 query_accession => undef,
248 sub query_accession { subroutine
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| H A D | BlastPullResult.pm | 120 query_accession => 'header',
146 $self->_fields->{query_accession} = '';
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| H A D | GenericResult.pm | 216 defined $qacc && $self->query_accession($qacc);
358 sub query_accession { subroutine
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| H A D | ResultI.pm | 232 sub query_accession { subroutine
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| /dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SearchIO/ |
| H A D | erpin.pm | 190 $accession && $self->query_accession($accession);
212 my $accession = $self->query_accession;
587 sub query_accession { subroutine
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| H A D | infernal.pm | 226 defined $accession && $self->query_accession($accession);
289 my ($accession, $description) = ($self->query_accession, $self->query_description);
880 sub query_accession { subroutine
1022 my ($accession, $description) = ($self->query_accession, $self->query_description);
1220 ($self->query_accession, $self->database, $self->algorithm,
1391 ($self->query_accession, $self->database, $self->algorithm,
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| H A D | rnamotif.pm | 191 $accession && $self->query_accession($accession);
223 ($self->query_accession, $self->database, $self->model);
671 sub query_accession { subroutine
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| H A D | gmap_f9.pm | 167 $result->query_accession($id);
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| /dports/biology/p5-BioPerl/BioPerl-1.7.7/t/SearchIO/ |
| H A D | rnamotif.t | 39 is($result->query_accession, 'test', "Result query_accession");
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| H A D | erpin.t | 36 is($result->query_accession, 'test', "Result query_accession");
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| H A D | infernal.t | 35 is( $result->query_accession, 'RF00174', 'Check query_accession' );
192 is($result->query_accession, 'RF01234', "Result query_accession");
428 is($result->query_accession, 'RF00167', "Result query_accession");
684 is($result->query_accession, 'RF00167', "Result query_accession");
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| H A D | blast.t | 53 is( $result->query_accession, 'AAC73113.1' );
139 is( $result->query_accession, 'AAC73113.1' );
262 is( $result->query_accession, 'AAC73113.1' );
560 is( $result->query_accession, 'M10040.1' );
726 is( $result->query_accession, 'AAA22406.1' );
822 is( $result->query_accession, 'M10040.1' );
959 is( $result->query_accession, 'NM_003201.1' );
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| /dports/biology/p5-BioPerl/BioPerl-1.7.7/examples/searchio/ |
| H A D | blast_example.pl | 28 print "Result\tquery_accession\t" . $result->query_accession . "\n";
|