Searched refs:rawExtension (Results 1 – 13 of 13) sorted by relevance
254 amino="faa".equals(rawExtension()); in FileFormat()316 String ext=ReadWrite.rawExtension(slc); in testFormat()548 String ext=ReadWrite.rawExtension(fname); in isFastaFile()554 String ext=ReadWrite.rawExtension(fname); in isPgmFile()583 String ext=ReadWrite.rawExtension(fname); in isFastqFile()594 String ext=ReadWrite.rawExtension(fname); in isSamOrBamFile()605 String ext=ReadWrite.rawExtension(fname); in isBamFile()618 public String rawExtension() { in rawExtension() method in FileFormat619 return ReadWrite.rawExtension(name); in rawExtension()622 String ext=ReadWrite.rawExtension(name); in rawExtensionCode()
1393 public static String rawExtension(String fname){ in rawExtension() method
25 rawExtension = types.Ref("k8s.io/apimachinery/pkg/runtime", "RawExtension") var
149 rawExtension.Name: {},
96 …if(fname.indexOf('#')>=0 && FileFormat.isFastq(ReadWrite.rawExtension(fname)) && !new File(fname).… in toSketches()
1229 …if(fname.indexOf('#')>=0 && FileFormat.isFastq(ReadWrite.rawExtension(fname)) && !new File(fname).… in processReadsMT()
319 String ext=ReadWrite.rawExtension(out1); in DemuxByName()
155 String ext=ReadWrite.rawExtension(out1); in DemuxByName2()
225 System.err.println("Does not seem to be a sequence or variant format: "+ff.rawExtension()); in process()
253 …if(showStats && outContigs!=null && FileFormat.isFasta(ReadWrite.rawExtension(outContigs)) && !Fil… in process()
760 …s!=null && processingMode==contigMode && FileFormat.isFasta(ReadWrite.rawExtension(outContigs)) &&… in process()
314 if(ReadWrite.rawExtension(out).equals("vcf")){ in CallVariants()
1070 String ext=ReadWrite.rawExtension(name); in getFileOrFiles()