Searched refs:rdmapArray (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-v0.3.1/src/ |
| H A D | preGraphConstruction.c | 652 PreGraph *newPreGraph_pg(RoadMapArray * rdmapArray, char *sequenceFilename) in newPreGraph_pg() argument
654 int WORDLENGTH = rdmapArray->WORDLENGTH; in newPreGraph_pg()
655 IDnum sequenceCount = rdmapArray->length; in newPreGraph_pg()
662 emptyPreGraph_pg(sequenceCount, rdmapArray->WORDLENGTH, rdmapArray->double_strand); in newPreGraph_pg()
665 setInsertionMarkers(rdmapArray, markerCounters, &veryLastMarker, in newPreGraph_pg()
669 countPreNodes(rdmapArray, preGraph, markerCounters, in newPreGraph_pg()
674 createPreNodes(rdmapArray, preGraph, markerCounters, in newPreGraph_pg()
682 connectPreNodes(rdmapArray, preGraph, chains); in newPreGraph_pg()
685 cleanUpMemory(preGraph, rdmapArray, chains); in newPreGraph_pg()
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| /dports/biology/velvet/velvet_1.2.10/contrib/MetaVelvet-1.2.01/Velvet-1.1.06/ |
| H A D | preGraphConstruction.c | 896 PreGraph *newPreGraph_pg(RoadMapArray * rdmapArray, char *sequenceFilename) in newPreGraph_pg() argument
898 int WORDLENGTH = rdmapArray->WORDLENGTH; in newPreGraph_pg()
899 IDnum sequenceCount = rdmapArray->length; in newPreGraph_pg()
906 …emptyPreGraph_pg(sequenceCount, rdmapArray->referenceCount, rdmapArray->WORDLENGTH, rdmapArray->do… in newPreGraph_pg()
909 setInsertionMarkers(rdmapArray, markerCounters, &veryLastMarker, in newPreGraph_pg()
913 countPreNodes(rdmapArray, preGraph, markerCounters, in newPreGraph_pg()
918 createPreNodes(rdmapArray, preGraph, markerCounters, in newPreGraph_pg()
929 connectPreNodes(rdmapArray, preGraph, chains); in newPreGraph_pg()
932 cleanUpMemory(preGraph, rdmapArray, chains); in newPreGraph_pg()
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| /dports/biology/velvet/velvet_1.2.10/src/ |
| H A D | preGraphConstruction.c | 945 PreGraph *newPreGraph_pg(RoadMapArray * rdmapArray, SequencesReader *seqReadInfo) in newPreGraph_pg() argument
947 int WORDLENGTH = rdmapArray->WORDLENGTH; in newPreGraph_pg()
948 IDnum sequenceCount = rdmapArray->length; in newPreGraph_pg()
955 …emptyPreGraph_pg(sequenceCount, rdmapArray->referenceCount, rdmapArray->WORDLENGTH, rdmapArray->do… in newPreGraph_pg()
958 setInsertionMarkers(rdmapArray, markerCounters, &veryLastMarker, in newPreGraph_pg()
962 countPreNodes(rdmapArray, preGraph, markerCounters, in newPreGraph_pg()
967 createPreNodes(rdmapArray, preGraph, markerCounters, in newPreGraph_pg()
978 connectPreNodes(rdmapArray, preGraph, chains); in newPreGraph_pg()
981 cleanUpMemory(preGraph, rdmapArray, chains); in newPreGraph_pg()
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