Searched refs:readLogOut (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/abyss/abyss-2.3.1/BloomDBG/ |
| H A D | AssemblyStreams.h | 19 std::ostream& readLogOut; member
23 std::ostream& readLogOut) : in AssemblyStreams()
25 traceOut(traceOut), readLogOut(readLogOut) {} in AssemblyStreams()
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| H A D | bloom-dbg.cc | 278 std::ofstream readLogOut; in resumeAssemblyFromCheckpoint() local
280 readLogOut.open(params.readLogPath.c_str()); in resumeAssemblyFromCheckpoint()
281 assert_good(readLogOut, params.readLogPath); in resumeAssemblyFromCheckpoint()
282 BloomDBG::ReadRecord::printHeaders(readLogOut); in resumeAssemblyFromCheckpoint()
283 assert_good(readLogOut, params.readLogPath); in resumeAssemblyFromCheckpoint()
287 BloomDBG::AssemblyStreams<FastaConcat> streams(in, out, checkpointOut, traceOut, readLogOut); in resumeAssemblyFromCheckpoint()
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| H A D | bloom-dbg.h | 936 std::ofstream readLogOut; in assemble() local
938 readLogOut.open(params.readLogPath.c_str()); in assemble()
939 assert_good(readLogOut, params.readLogPath); in assemble()
940 ReadRecord::printHeaders(readLogOut); in assemble()
941 assert_good(readLogOut, params.readLogPath); in assemble()
945 AssemblyStreams<FastaConcat> streams(in, out, checkpointOut, traceOut, readLogOut); in assemble()
1060 streams.readLogOut << result; in assemble()
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