Searched refs:readRev (Results 1 – 10 of 10) sorted by relevance
/dports/biology/seqan1/seqan-1.3.1/apps/razers2/ |
H A D | razers.h | 1387 TReadPrefixRev readRev(prefix(readSet[readId], ndlLength)); 1388 TMyersPatternRev myersPatternRev(readRev); 1390 TReadRev readRev(readSet[readId]); 1391 TMyersPatternRev myersPatternRev(readRev); 1443 TReadPrefixRev readRev(prefix(readSet[readId], ndlLength)); 1444 TMyersPatternRev myersPatternRev(readRev); 1446 TReadRev readRev(readSet[readId]); 1447 TMyersPatternRev myersPatternRev(readRev);
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers3/ |
H A D | razers.h | 2238 TReadRev readRev(readPrefix); 2240 TMyersPatternRev myersPatternRev(readRev); 2245 while (find(myersFinderRev, readRev, verifier.revPatternState, maxScore)) 2341 TReadRev readRev(readPrefix); 2343 TMyersPatternRev myersPatternRev(readRev); 2348 while (find(myersFinderRev, readRev, verifier.revPatternState, maxScore))
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/dports/biology/seqan1/seqan-1.3.1/apps/razers/ |
H A D | razers_spliced.h | 509 TReadRev readRev; in matchVerify() local 511 …setHost(readRev,infix(readSet[rseqNo],length(readSet[rseqNo])-options.minMatchLen,length(readSet[r… in matchVerify() 513 setHost(readRev,infix(readSet[rseqNo],0,options.minMatchLen)); in matchVerify() 515 TMyersPatternRev myersPatternRev(readRev); in matchVerify()
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H A D | razers.h | 1419 TReadRev readRev(readSet[rseqNo]); 1421 TMyersPatternRev myersPatternRev(readRev);
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/dports/biology/seqan1/seqan-1.3.1/apps/splazers/ |
H A D | razers_spliced.h | 522 TReadRev readRev; in matchVerify() local 524 …setHost(readRev,infix(readSet[rseqNo],length(readSet[rseqNo])-options.minMatchLen,length(readSet[r… in matchVerify() 526 setHost(readRev,infix(readSet[rseqNo],0,options.minMatchLen)); in matchVerify() 528 TMyersPatternRev myersPatternRev(readRev); in matchVerify()
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H A D | razers.h | 1440 TReadRev readRev(readSet[rseqNo]); 1442 TMyersPatternRev myersPatternRev(readRev);
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/ |
H A D | razers_spliced.h | 509 TReadRev readRev; in matchVerify() local 515 setHost(readRev, readInf); in matchVerify() 517 TMyersPatternRev myersPatternRev(readRev); in matchVerify()
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H A D | razers.h | 1472 TReadRev readRev(readSet[rseqNo]); 1474 TMyersPatternRev myersPatternRev(readRev);
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/ |
H A D | razers.h | 1431 TReadRev readRev(readSet[rseqNo]); 1433 TMyersPatternRev myersPatternRev(readRev);
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H A D | razers_spliced.h | 676 TReadRev readRev; in matchVerify() local 682 setHost(readRev, readInf); in matchVerify() 684 TMyersPatternRev myersPatternRev(readRev); in matchVerify()
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