Home
last modified time | relevance | path

Searched refs:readRev (Results 1 – 10 of 10) sorted by relevance

/dports/biology/seqan1/seqan-1.3.1/apps/razers2/
H A Drazers.h1387 TReadPrefixRev readRev(prefix(readSet[readId], ndlLength));
1388 TMyersPatternRev myersPatternRev(readRev);
1390 TReadRev readRev(readSet[readId]);
1391 TMyersPatternRev myersPatternRev(readRev);
1443 TReadPrefixRev readRev(prefix(readSet[readId], ndlLength));
1444 TMyersPatternRev myersPatternRev(readRev);
1446 TReadRev readRev(readSet[readId]);
1447 TMyersPatternRev myersPatternRev(readRev);
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers3/
H A Drazers.h2238 TReadRev readRev(readPrefix);
2240 TMyersPatternRev myersPatternRev(readRev);
2245 while (find(myersFinderRev, readRev, verifier.revPatternState, maxScore))
2341 TReadRev readRev(readPrefix);
2343 TMyersPatternRev myersPatternRev(readRev);
2348 while (find(myersFinderRev, readRev, verifier.revPatternState, maxScore))
/dports/biology/seqan1/seqan-1.3.1/apps/razers/
H A Drazers_spliced.h509 TReadRev readRev; in matchVerify() local
511 …setHost(readRev,infix(readSet[rseqNo],length(readSet[rseqNo])-options.minMatchLen,length(readSet[r… in matchVerify()
513 setHost(readRev,infix(readSet[rseqNo],0,options.minMatchLen)); in matchVerify()
515 TMyersPatternRev myersPatternRev(readRev); in matchVerify()
H A Drazers.h1419 TReadRev readRev(readSet[rseqNo]);
1421 TMyersPatternRev myersPatternRev(readRev);
/dports/biology/seqan1/seqan-1.3.1/apps/splazers/
H A Drazers_spliced.h522 TReadRev readRev; in matchVerify() local
524 …setHost(readRev,infix(readSet[rseqNo],length(readSet[rseqNo])-options.minMatchLen,length(readSet[r… in matchVerify()
526 setHost(readRev,infix(readSet[rseqNo],0,options.minMatchLen)); in matchVerify()
528 TMyersPatternRev myersPatternRev(readRev); in matchVerify()
H A Drazers.h1440 TReadRev readRev(readSet[rseqNo]);
1442 TMyersPatternRev myersPatternRev(readRev);
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/razers/
H A Drazers_spliced.h509 TReadRev readRev; in matchVerify() local
515 setHost(readRev, readInf); in matchVerify()
517 TMyersPatternRev myersPatternRev(readRev); in matchVerify()
H A Drazers.h1472 TReadRev readRev(readSet[rseqNo]);
1474 TMyersPatternRev myersPatternRev(readRev);
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/splazers/
H A Drazers.h1431 TReadRev readRev(readSet[rseqNo]);
1433 TMyersPatternRev myersPatternRev(readRev);
H A Drazers_spliced.h676 TReadRev readRev; in matchVerify() local
682 setHost(readRev, readInf); in matchVerify()
684 TMyersPatternRev myersPatternRev(readRev); in matchVerify()