| /dports/science/gromacs/gromacs-2021.4/scripts/ |
| H A D | make_gromos_rtp.pl | 35 $read_bonds = 0; $k = 0;
59 $read_atoms = 0; $read_bonds = 1; $skip = 1; #skip next line
63 $read_bonds = 0; $read_angles = 1; $skip = 1; #skip next line
82 if (!($read_atoms || $read_bonds || $read_angles || $read_dihedrals
92 if ($read_bonds) {
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| /dports/science/py-rmf/rmf-1.3.1/plugins/vmd/ |
| H A D | init.cpp | 75 boost::bind(&RMF_vmd::Data::read_bonds, _1, nbonds, fromptr, toptr, in read_rmf_bonds()
105 plugin.read_bonds = read_rmf_bonds; in init_plugin()
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| H A D | Data_read.cpp | 71 int Data::read_bonds(int *nbonds, int **fromptr, int **toptr, in read_bonds() function in RMF_vmd::Data
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| H A D | Data.h | 122 int read_bonds(int *nbonds, int **fromptr, int **toptr, float **bondorderptr,
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| /dports/science/rmf/rmf-1.3.1/plugins/vmd/ |
| H A D | init.cpp | 75 boost::bind(&RMF_vmd::Data::read_bonds, _1, nbonds, fromptr, toptr, in read_rmf_bonds()
105 plugin.read_bonds = read_rmf_bonds; in init_plugin()
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| H A D | Data_read.cpp | 71 int Data::read_bonds(int *nbonds, int **fromptr, int **toptr, in read_bonds() function in RMF_vmd::Data
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| H A D | Data.h | 122 int read_bonds(int *nbonds, int **fromptr, int **toptr, float **bondorderptr,
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| /dports/science/gromacs/gromacs-2021.4/src/external/vmd_molfile/ |
| H A D | molfile_plugin.h | 569 int (*read_bonds)(void *, int *nbonds, int **from, int **to, float **bondorder, member
572 int (*read_bonds)(void *, int *nbonds, int **from, int **to, float **bondorder); member
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| /dports/science/py-rmf/rmf-1.3.1/plugins/vmd/include/ |
| H A D | molfile_plugin.h | 627 int (*read_bonds)(void *, int *nbonds, int **from, int **to, member
631 int (*read_bonds)(void *, int *nbonds, int **from, int **to, member
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| /dports/science/rmf/rmf-1.3.1/plugins/vmd/include/ |
| H A D | molfile_plugin.h | 627 int (*read_bonds)(void *, int *nbonds, int **from, int **to, member
631 int (*read_bonds)(void *, int *nbonds, int **from, int **to, member
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| /dports/science/py-pymol/pymol-open-source-2.4.0/contrib/uiuc/plugins/molfile_plugin/src/ |
| H A D | pdbplugin.c | 203 static int read_bonds(void *v, int *nbonds, int **fromptr, int **toptr, in read_bonds() function
590 plugin.read_bonds = read_bonds; in VMDPLUGIN_init()
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| H A D | parmplugin.cpp | 141 plugin.read_bonds = read_parm_bonds; in VMDPLUGIN_init()
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| H A D | parm7plugin.cpp | 167 plugin.read_bonds = read_parm7_bonds; in VMDPLUGIN_init()
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| H A D | psfplugin.c | 469 static int read_bonds(void *v, int *nbonds, int **fromptr, int **toptr, in read_bonds() function
1096 plugin.read_bonds = read_bonds; in VMDPLUGIN_init()
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| H A D | maeffplugin.cpp | 1807 int read_bonds(void *v, int *nbonds, int **from, int **to, float** order, function
1810 int read_bonds(void *v, int *nbonds, int **from, int **to, float** order) {
2041 maeff.read_bonds = read_bonds;
2088 if (read_bonds(v, &nbonds, &from, &to, &order) !=MOLFILE_SUCCESS) return 1;
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| H A D | mdfplugin.cpp | 410 plugin.read_bonds = read_mdf_bonds; in VMDPLUGIN_init()
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| H A D | pdbxplugin.cpp | 1371 static int read_bonds(void *v, int *nbonds, int **fromptr, int **toptr, in read_bonds() function
1454 plugin.read_bonds = read_bonds; in VMDPLUGIN_init()
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| H A D | vtfplugin.c | 1239 vsfplugin.read_bonds = vtf_read_bonds; in VMDPLUGIN_init()
1273 vtfplugin.read_bonds = vtf_read_bonds; in VMDPLUGIN_init()
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| H A D | mol2plugin.cpp | 595 plugin.read_bonds = read_mol2_bonds; in VMDPLUGIN_init()
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| H A D | bgfplugin.cpp | 653 plugin.read_bonds = read_bgf_bonds; in VMDPLUGIN_init()
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| /dports/science/plumed/plumed2-2.7.2/src/molfile/ |
| H A D | pdbplugin.cpp | 238 static int read_bonds(void *v, int *nbonds, int **fromptr, int **toptr, in read_bonds() function
625 plugin.read_bonds = read_bonds; in VMDPLUGIN_init()
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| H A D | molfile_plugin.h | 702 int (*read_bonds)(void *, int *nbonds, int **from, int **to, float **bondorder, member
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| /dports/science/py-pymol/pymol-open-source-2.4.0/contrib/uiuc/plugins/include/ |
| H A D | molfile_plugin.h | 661 int (*read_bonds)(void *, int *nbonds, int **from, int **to, float **bondorder, member
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| /dports/science/lammps/lammps-stable_29Sep2021/lib/molfile/ |
| H A D | molfile_plugin.h | 706 int (*read_bonds)(void *, int *nbonds, int **from, int **to, float **bondorder, member
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| /dports/science/py-pymol/pymol-open-source-2.4.0/layer3/ |
| H A D | PlugIOManager.cpp | 700 if (plugin->read_bonds && in PlugIOManagerLoadMol()
701 plugin->read_bonds(file_handle, &nbonds, &from, &to, &order, in PlugIOManagerLoadMol()
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