Searched refs:read_pos_end (Results 1 – 3 of 3) sorted by relevance
41 short read_pos_end; member
793 unsigned short read_pos_start_2 = (is_negative?read_len -read_pos_end:read_pos_start) ; in insert_big_margin_record()794 unsigned short read_pos_end_2 = (is_negative?read_len -read_pos_start:read_pos_end); in insert_big_margin_record()2646 explain_context.tmp_search_junctions[0].read_pos_end = back_search_read_tail; in explain_read()3219 int read_pos_start, read_pos_end; in finalise_explain_CIGAR() local3239 read_pos_end = current_section -> read_pos_end; in finalise_explain_CIGAR()3242 sprintf(piece_cigar, "%dM", (read_pos_end - read_pos_start)); in finalise_explain_CIGAR()3243 total_perfect_matched_sections += (read_pos_end - read_pos_start); in finalise_explain_CIGAR()3244 flanking_size_left[xk1] = (read_pos_end - read_pos_start); in finalise_explain_CIGAR()3250 flanking_size_right[xk1-1] = (read_pos_end - read_pos_start); in finalise_explain_CIGAR()3268 delta_one += (next_section->read_pos_end - next_section-> read_pos_start - 1); in finalise_explain_CIGAR()[all …]
651 short read_pos_end; member